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BCL8 (B-cell CLL/lymphoma 8)

Identity

Other namesBCL8A
HGNC (Hugo) BCL8
Location 15q11
Location_base_pair Starts at 20870055 and ends at 20876600 bp from pter ( according to hg19-Feb_2009)

DNA/RNA

 
Description Gene of 86686 bp with 3 exons(1bp-222bp/84886bp-85041bp/86517bp-86686bp). The 5' part of exon 1 and the 3' part of exon 3 are non coding.
Transcription Two alternative transcripts: a major transcript of 2.6Kb and a less expressed transcript of 4.5Kb, due to differential polyadenylation.
Coding sequence: CDS 208-510.
The direction of transcription is from telomere to centromere.
Pseudogene Identified a family of evolutionarily conserved human genes with extensive homology to BCL8; these genes are BCL8B (chr.13), BCL8C (chr.22), BCL8D (chr.2), and BCL8E (chr.10). BCL8B is the most complete gene, whereas the other genes are truncated, can yield only sterile transcripts, and thus are probably pseudogenes.

Protein

Description 100 amino acids, predicted molecular weight of 19 kDa; predicted: similar to protein neurobeachin (Lysosomal trafficking regulator 2).
Expression mRNA predominantly expressed in testis and prostate, with no transcripts normally found in hematopoietic tissues. Its expression in lymphoid tissues can be activated by chromosomal translocation or by other mechanisms in diffuse large B-cell lymphoma (DLBCL) patients. BCL8 expression was detected in all patients with 15q11-13 abnormalities and in a significant proportion of DLBCL patients.
Function Probably produced truncated polypeptides with uncertain function.
Homology Interspecies: homolog to N-terminal of Caenorhabditis elegans F10.f2.1(59% homology) and to N-terminal of Drosophila melanogaster protein kinase A (PKA) anchoring protein RG (67% homology).

Implicated in

Entity t(14;15)(q32;q11) --> IghV - BCL8
Note Possibly other translocations of BCL8 involve other sites such as 22q11, 9p13, 1p32,7p13, 12q24, and 15q22.
Disease Translocations affecting BCL8 gene and various partners occur in about 4% of diffuse large B-cell lymphoma (DLBCL). Translocations involving the chromosomal region 15q11-13 have also been identified in non lymphoid tumors.
Prognosis The effect of BCL8 expression on the prognosis of patients has yet to be investigated.
Hybrid/Mutated Gene The chromosomal translocation does not led to the formation of a hybrid gene.
Oncogenesis Chromosomal translocation in DLBCL causes activation of the BCL8 proto-oncogene by deregulated expression of BCL8.
  

Breakpoints

 

External links

Nomenclature
HGNC (Hugo)BCL8   1007
Entrez_Gene (NCBI)BCL8  606  B-cell CLL/lymphoma 8
Cards
AtlasBCL8ID781ch15q11
GeneCards (Weizmann)BCL8
Ensembl (Hinxton) [Gene_View]  BCL8 [Vega]
AceView (NCBI)BCL8
Genatlas (Paris)BCL8
euGene (Indiana)606
SOURCE (Stanford)
Genomic and cartography
GoldenPath (UCSC)BCL8  -  15q11   chr15:20870055-20876600 -  15q11.2   [Description]    (hg19-Feb_2009)
EnsemblBCL8 - 15q11.2 [CytoView]
Mapping of homologs : NCBIBCL8 [Mapview]
OMIM601889   
Gene and transcription
Gene : Genbank (Entrez)AL832227 DA278599
Reference sequence (RefSeq transcript) :SRS
Reference transcript : Entrez
RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NT_037852 NW_001838150 NW_001838151 NW_001838152 NW_001838153 NW_001838154 NW_001838155 NW_001842155 NW_923197 NW_925650 NW_925667 NW_925755 NW_925968 NW_926034 NW_926220 NW_926280 NW_927115
RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NT_037852 NW_001838150 NW_001838151 NW_001838152 NW_001838153 NW_001838154 NW_001838155 NW_001842155 NW_923197 NW_925650 NW_925667 NW_925755 NW_925968 NW_926034 NW_926220 NW_926280 NW_927115
Consensus coding sequences : CCDS NCBIBCL8
Cluster EST : UnigeneHs.722799 [ SRS ] Hs.722799 [ NCBI ]
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP0C6P0 (SRS) P0C6P0 (Expasy) P0C6P0 (Uniprot)
With graphics : InterProP0C6P0
Splice isoforms : VarSplice FASTAP0C6P0(VarSplice FASTA)
Related proteins : CluSTrP0C6P0
Domain families : Pfam SRS
Domain families : Pfam Sanger
Domain families : Pfam NCBI
Blocks (Seattle)P0C6P0
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
Protein Interaction databases
DIP (DOE-UCLA)P0C6P0
IntAct (EBI)P0C6P0
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIBCL8
SNP : GeneSNP UtahBCL8
SNP : HGBaseBCL8
Genetic variants : HAPMAPBCL8
Mutations and Diseases : HGMDBCL8
Hereditary diseases : OMIM601889   
Hereditary diseases : GENETests601889   
Diseases : Genetic AssociationBCL8
General knowledge
Homologs : HomoloGeneBCL8
Homology/Alignments : Family Browser UCSCBCL8
Phylogenetic Trees/Animal Genes : TreeFamBCL8
Chemical/Protein Interactions : CTD606
Keywords Ontology : AmiGO
Keywords Ontology : EGO-EBI
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesBCL8 Related clones (RZPD - Berlin)
Literature
PubMed5 Pubmed reference(s) in Entrez
PubGeneBCL8

Bibliography

BCL8, a novel gene involved in translocations affecting band 15q11-13 in diffuse large-cell lymphoma.
Dyomin VG, Rao PH, Dalla-Favera R, Chaganti RS
Proceedings of the National Academy of Sciences of the United States of America. 1997 ; 94 (11) : 5728-5732.
PMID 9159141
 
Non-Hodgkin's Lymphoma: Molecular Features of B Cell Lymphoma.
Macintyre E, Willerford D, Morris SW
Hematology / the Education Program of the American Society of Hematology. American Society of Hematology. Education Program. 2000 : 180-204.
PMID 11701542
 
BCL8 is a novel, evolutionarily conserved human gene family encoding proteins with presumptive protein kinase A anchoring function.
Dyomin VG, Chaganti SR, Dyomina K, Palanisamy N, Murty VV, Dalla-Favera R, Chaganti RS
Genomics. 2002 ; 80 (2) : 158-165.
PMID 12160729
 
Organisation of the pericentromeric region of chromosome 15: at least four partial gene copies are amplified in patients with a proximal duplication of 15q.
Fantes JA, Mewborn SK, Lese CM, Hedrick J, Brown RL, Dyomin V, Chaganti RS, Christian SL, Ledbetter DH
Journal of medical genetics. 2002 ; 39 (3) : 170-177.
PMID 11897815
 
Molecular heterogeneity of diffuse large B-cell lymphoma: implications for disease management and prognosis.
Rossi D, Gaidano G
Hematology (Amsterdam, Netherlands). 2002 ; 7 (4) : 239-252.
PMID 14972786
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-2008Silvia Rasi, Gianluca Gaidano
Division of Hematology, Department of Clinical and Experimental Medicine and Center of Biotechnologies for Applied Medical Research, Amedeo Avogadro University of Eastern Piedmont, Via Solaroli 17, 28100 Novara, Italy

Citation

This paper should be referenced as such :
Rasi S, Gaidano G . BCL8 (B-cell CLL/lymphoma 8). Atlas Genet Cytogenet Oncol Haematol. February 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL8ID781ch15q11.html

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indexed on : Tue Aug 31 20:11:07 CEST 2010

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