FABP7 (fatty acid binding protein 7, brain)

2014-01-01   Roseline Godbout , Ho-Yin Poon , Rong-Zong Liu 

Department of Oncology, University of Alberta, Cross Cancer Institute, 11560 University Avenue, Edmonton, Alberta, T6G 1Z2 Canada

Identity

HGNC
LOCATION
6q22.31
LOCUSID
ALIAS
B-FABP,BLBP,FABPB,MRG
FUSION GENES

DNA/RNA

Atlas Image
FABP7 gene. The FABP7 gene is located on chromosome 6 in the region of q22-q23 on the positive strand. Neighboring genes are indicated.

Description

The FABP7 gene is 4,5 kb long and contains 4 exons, all of which contain coding sequences.
The following FABP7 SNPs have been validated: 7 in the 3 UTR, 6 in the 5 UTR, 5 missense and 4 SNPs in the coding region that dont alter the amino acid code (dbSNP).

Transcription

Transcripts: The transcript is approximately 1000 nucleotides with an open reading frame of 399 nucleotides, a 5 untranslated region of 294 nucleotides and a 3 untranslated region of 306 nucleotides.
Based on EST data, FABP7 RNA is most highly expressed in the fetus, followed by adult brain, eye, connective tissue, bone, heart, kidney, mammary gland, skin, uterus, lung and testis.
Transcription regulators: Members of the nuclear factor I (NFI) family regulate the transcription of the FABP7 gene (Bisgrove et al., 2000; Brun et al., 2009). The phosphorylation state of NFI determines its regulatory activity, with FABP7 transcription up-regulated by hypophosphorylated NFI (Bisgrove et al., 2000; Brun et al., 2013). Other transcription factors implicated in the regulation of FABP7 include Notch (Anthony et al., 2005), PAX6 (Arai et al., 2005; Numayama-Tsuruta et al., 2010; Liu et al., 2012b), and POU-domain protein PBX-1 (Josephson et al., 1998). Furthermore, ligands of peroxisome proliferator-activated receptors (PPARs) such as clofibrate and omega-3 docosahexaenoic acid (DHA) have been shown to up-regulate FABP7 expression (Nasrollahzadeh et al., 2008; Venkatachalam et al., 2012).
Post-transcriptional regulation: The 3 untranslated region of FABP7 contains phylogenetically conserved cytoplasmic polyadenylation elements (CPE) which have been implicated in the trafficking and localized translation of FABP7 at perisynaptic processes of astrocytic cells (Gerstner et al., 2012).

Pseudogene

A predicted FABP7 pseudogene is located on chromosome 1 (NCBI nucleotide database NG_029025.1). There are two inferred human FABP7 pseudogenes listed in the Rat Genome Database (http://rgd.mcw.edu/rgdweb/report/gene/main.html?id=5132511 on chromosome 1 and http://www.rgd.mcw.edu/rgdweb/report/gene/main.html?id=6481032 on chromosome 2).

Proteins

Atlas Image
Crystal structure of FABP7 bound to DHA. The structure of FABP7 is similar to that of other FABPs and consists of two N-terminal α-helices attached to a β-barrel motif (left). Three amino acids are predicted to be important for fatty acid binding: F104 (fuchsia), arginine 126 (red) and Y128 (teal) based on the structure of FABP7 bound to DHA. DHA is shown in yellow (right). Structural data were obtained from the Protein Data Bank (PDB ID: 1FE3) (Balendiran et al., 2000) and rendered using PyMOL (Beaulieu, 2012).

Description

FABP7 is a member of the intracellular lipid-binding protein family. FABP7 is a 132 amino acid polypeptide with an estimated molecular mass of 15 kDa. It has a beta-clam structure made up of ten anti-parallel beta sheets capped by two alpha helices. Fatty acid ligands reside inside the beta-clam structure.

Expression

FABP7 is expressed in radial glial cells during brain development (Feng et al., 1994). FABP7 persists in specific regions of the mature mouse brain, including glia limitans, in radial glial cells of the hippocampal dentate gyrus and Bergman glial cells (Kurtz et al., 1994). FABP7 is also expressed in glial cells of the peripheral nervous system, and ensheathing cells of the olfactory nerve (Kurtz et al., 1994).

Localisation

The FABP7 protein is found in both the cytoplasm and nucleus of normal radial glial cells (Feng et al., 1994) and tumor cells (Liang et al., 2006; Slipicevic et al., 2008). FABP7 is also found in perisynaptic processes of astrocytes with localized translation of FABP7 at these sites (Gerstner et al., 2012).

Function

Recombinant human FABP7 exhibits the highest affinity for the polyunsaturated omega-3 fatty acids α-linolenic acid, eicosapentaenoic acid, docosahexaenoic acid, and for monounsaturated omega-9 oleic acid (Kd from 28 to 53 nM) and moderate affinity for the polyunsaturated omega-6 fatty acids, linoleic acid and arachidonic acid (AA) (Kd from 115 to 206 nM) (Balendiran et al., 2000). FABP7 has low binding affinity for saturated long chain fatty acids. Human FABP7 enhances DHA trafficking to the nucleus (Mita et al., 2010).
FABP7 is required for the establishment of the radial glial fiber system along which neurons migrate in order to reach their correct destination in the developing brain (Feng et al., 1994). FABP7 is also required for the maintenance of neuroepithelial cells in rat cortex (Arai et al., 2005). FABP7 knock-out mice have a structurally normal brain; however, the mice show enhanced anxiety and increased fear memory, as well as decreased DHA in neonatal brain and increased AA in adult brain amygdala (Owada et al., 2006).

Homology

Human FABP7 amino acid sequence is 86,4% identical to mouse FABP7, 90,9% identical to chicken FABP7, 82,6% identical to zebrafish FABP7a and 78% identical to zebrafish FABP7b. Human FABP7 shows variable sequence identity with the other FABP paralogues, with the lowest identity to FABP1 (27,6%) and highest identity to FABP3 (65,9%).

Mutations

Note

With the exception of SNPs, no mutations in the FABP7 gene have been reported.

Implicated in

Entity name
Malignant glioma (grades III and IV astrocytoma) / glioblastoma multiforme (grade IV astrocytoma)
Note
FABP7 was first reported to be expressed in malignant glioma cell lines and malignant glioma tumour tissue in 1998 (Godbout et al., 1998). Liang et al. (2005) used gene expression profiling to demonstrate that FABP7 RNA levels were elevated in glioblastoma tumours compared to normal brain. These authors showed that elevated levels of nuclear FABP7 protein were associated with decreased survival in patients with glioblastoma multiforme, particularly in younger patients. Subsequent analysis of 123 glioblastomas by Kaloshi et al. (2007) revealed a correlation between nuclear FABP7, EGFR amplification and more invasive tumours. De Rosa et al. (2012) also showed a correlation between elevated FABP7 levels and decreased survival in patients with glioblastoma multiforme.
Transfection of a FABP7 expression construct into the SF767 malignant glioma cell line results in increased cell migration (Liang et al., 2005). A role for FABP7 in malignant glioma cell migration was confirmed by Mita et al. (2007) who used human U87 malignant glioma cell lines stably transfected with a FABP7 expression construct to demonstrate a correlation between FABP7 expression and increased cell migration. In agreement with a role for FABP7 in migration and infiltration, FABP7 was found to be preferentially expressed at sites of infiltration and surrounding blood vessels in glioblastoma multiforme (Mita et al., 2007).
Growth of malignant glioma cell lines in the presence of polyunsaturated fatty acids omega-3 DHA and omega-6 AA indicates that the ratio of AA:DHA affects migration in FABP7-positive cells, with a higher DHA:AA ratio resulting in decreased migration (Mita et al., 2010). These results suggest that glioblastoma tumour growth and infiltration may be controlled by increasing levels of DHA in tumour tissue (Elsherbiny et al., 2013).
Neurospheres derived from glioblastoma multiforme express high levels of FABP7, suggesting the presence of FABP7-positive neural stem-like cells in glioblastoma (De Rosa et al., 2012). In keeping with this possibility, FABP7 is preferentially expressed in the subset of glioblastoma tumour cells that express the neural stem cell marker CD133 (Liu et al., 2009). Knock-down of FABP7 in glioblastoma-derived neurosphere cultures results in decreased cell migration and reduced proliferation (De Rosa et al., 2012).
The FABP7 promoter has been shown to be hypomethylated in glioblastoma tumours compared to normal brain (Etcheverry et al., 2010).
Atlas Image
FABP7 mRNA levels are upregulated in human glioblastoma. Comparison of FABP7 mRNA levels in normal human brain versus glioblastoma tissues. Database obtained from Oncomine website (www.oncomine.org; Bredel Brain 2).
Entity name
Breast cancer
Note
MRG (mammary-derived growth inhibitor-related gene), later shown to be identical to FABP7 (Hohoff and Spener, 1998), was reported to be expressed in normal and benign breast tissue but only rarely in breast cancer (1 of 10 infiltrative breast cancers and 2 of 12 ductal carcinomas in situ) (Shi et al., 1997). Transfection of a MRG expression construct into the MDA-MB-231 breast cancer cell line suppressed cell proliferation and tumour growth in an orthotopic mouse model (Shi et al., 1997). Subsequent work showed that MRG over-expression induced differentiation in human breast cancer cells and that treatment of breast cancer cells with DHA causes MRG-dependent growth inhibition (Wang et al., 2000).
Preferential expression of FABP7 in estrogen receptor-negative breast cancer compared to estrogen receptor-positive breast cancer has been reported by four separate groups (Tang et al., 2010; Zhang et al., 2010; Graham et al., 2011; Liu et al., 2012a). In an analysis of 176 primary breast cancers, Liu et al. (2012) found a correlation between elevated FABP7 levels and poor prognosis. These authors further showed that depletion of FABP7 in FABP7-positive/estrogen-negative MDA-MB-435S, reduced cell growth and sensitized the cells to growth inhibition by DHA. In addition, FABP7 was found to mediate DHA-induced retinoid-X-receptor beta (RXRβ) activation in triple-negative BT-20 breast cancer cells as well as MDA-MB-435S cells. In a study of 899 invasive breast cancer cases, Zhang et al. (2010) showed that basal breast cancers (estrogen/progesterone receptor-negative, HER2-negative) that were FABP7-positive had significantly better outcomes than basal breast cancers that were FABP7-negative. Analysis of the subcellular localization of FABP7 in 1249 unselected and 245 estrogen receptor-negative invasive breast cancers revealed both nuclear and cytoplasmic staining patterns, with nuclear FABP7 associated with a high histological grade, stage, mitotic frequency, as well as basal and triple-negative status (Alshareeda et al., 2012). Within the basal category, elevated levels of nuclear FABP7 were associated with longer disease-free survival. In light of the proposed roles for nuclear FABPs in making their fatty acid ligands available to nuclear receptors such as PPARs, understanding the roles of cytoplasmic and nuclear FABP7 will help elucidate its biological functions in breast cancer.
Entity name
Renal cell carcinoma
Note
FABP7 RNA and protein are up-regulated in renal cell carcinoma compared to normal kidney tissue (Seliger et al., 2005; Teratani et al., 2007; Domoto et al., 2007). Analysis of a tissue microarray containing 272 renal cell carcinomas showed significantly lower levels of FABP7 in grades 3 and 4 compared to grades 1 and 2 renal cell carcinomas (Tölle et al., 2009). No correlation was found between patient survival and FABP7 staining intensity. In agreement with malignant glioma experiments, knock-down of FABP7 in human kidney carcinoma cells resulted in decreased cell migration (Tölle et al., 2011).
The regulation of FABP7 in renal cell carcinoma has been addressed by analysing the FABP7 promoter (Takaoka et al., 2011). This analysis indicates that BRN2 (POU3F2) and nuclear factor I (NFI) may be regulating the expression of FABP7 in renal cell carcinoma.
Entity name
Melanoma
Note
FABP7 been reported to be both down-regulated in melanoma compared to benign nevi (de Wit et al., 2005) and widely expressed in melanoma (Goto et al., 2010). FABP7 immunostaining of 149 primary melanomas revealed an association between FABP7 expression and tumour thickness, as well as a trend towards increased relapse-free survival for patients who had tumors with low cytoplasmic FABP7 levels (Slipicevic et al., 2008). Knock-down of FABP7 in human melanoma cells resulted in decreased cell proliferation and invasion. There was no association between the nuclear expression of FABP7 and patient survival in this study (Slipicevic et al., 2008).
Gene expression analysis of 87 primary melanomas and 68 metastatic melanoma, combined with immunohistochemical analysis of 37 paired primary and metastatic melanomas, showed significantly decreased FABP7 levels in metastatic melanoma compared to primary tumor tissue (Goto et al., 2010). In metastatic melanoma, FABP7 mRNA expression was associated with decreased relapse-free survival and overall survival (Goto et al., 2010). Loss of heterozygosity analysis using microsatellite markers specific to the FABP7 gene revealed that 10 of 20 metastatic melanomas (and 0 of 14 primary melanomas) had undergone loss of one FABP7 allele, leading the authors to postulate that genomic instability that favors loss of FABP7 expression may lead to better prognosis.
Entity name
Neurological disorders
Note
FABP7 is overexpressed in the brains of Down syndrome patients and has been postulated to contribute to Down syndrome-associated neurological disorders (Sánchez-Font et al., 2003).
Pelsers et al. (2004) measured FABP7 levels in various parts of the adult human brain, with a range of 0,8 μg/g wet weight in the striatum and 3,1 μg/g in the frontal lobe. Measurement of FABP7 and FABP3 levels in the serum of patients with minor brain injuries identified both these FABPs as more sensitive at detecting brain injury than markers currently in use for this purpose. Similarly, serum FABP7 and FABP3 served as markers for individuals who had undergone ischaemic stroke (Wunderlich et al., 2005). FABP7 levels were also elevated in the serum of patients with neurodegenerative diseases such as Alzheimers disease, Parkinsons disease and other cognitive disorders. Although elevated levels of FABP7 were found in only one-third of patients, FABP7 is still the most discriminatory serum marker identified to date (Teunissen et al., 2011). The authors propose that elevated levels of FABP7 in serum may reflect damage to the central nervous system.
FABP7-deficient mice have characteristics associated with schizophrenia such as decreased prepulse inhibition and shortened startle response latency (Watanabe et al., 2007). FABP7 RNA levels in the postmortem brains of male patients with schizophrenia were up-regulated in the dorsolateral prefrontal cortex. Furthermore, single nucleotide polymorphism (SNP) analysis revealed an association between missense polymorphism Thr61Met 182C>T) and male patients with schizophrenia (Watanabe et al., 2007). In a separate study, FABP7 SNPs F704, F705 and F709 showed nominal association with bipolar disorder (Iwayama et al., 2010). Analysis of 6 FABP7 variants identified by polymorphic screen failed to identify any associations with autism or schizophrenia in 285 autistic and 1060 schizophrenic patients of Japanese descent (Maekawa et al., 2010).

Bibliography

Pubmed IDLast YearTitleAuthors
225621772012Fatty acid binding protein 7 expression and its sub-cellular localization in breast cancer.Alshareeda AT et al
158795532005Brain lipid-binding protein is a direct target of Notch signaling in radial glial cells.Anthony TE et al
162371792005Role of Fabp7, a downstream gene of Pax6, in the maintenance of neuroepithelial cells during early embryonic development of the rat cortex.Arai Y et al
108544332000Crystal structure and thermodynamic analysis of human brain fatty acid-binding protein.Balendiran GK et al
108966612000Regulation of brain fatty acid-binding protein expression by differential phosphorylation of nuclear factor I in malignant glioma cell lines.Bisgrove DA et al
195408482009Nuclear factor I regulates brain fatty acid-binding protein and glial fibrillary acidic protein gene expression in malignant glioma cell lines.Brun M et al
238399472013Calcineurin regulates nuclear factor I dephosphorylation and activity in malignant glioma cell lines.Brun M et al
232848882012A radial glia gene marker, fatty acid binding protein 7 (FABP7), is involved in proliferation and invasion of glioblastoma cells.De Rosa A et al
170835652007Evaluation of S100A10, annexin II and B-FABP expression as markers for renal cell carcinoma.Domoto T et al
239813652013Interaction of brain fatty acid-binding protein with the polyunsaturated fatty acid environment as a potential determinant of poor prognosis in malignant glioma.Elsherbiny ME et al
211560362010DNA methylation in glioblastoma: impact on gene expression and clinical outcome.Etcheverry A et al
81614591994Brain lipid-binding protein (BLBP): a novel signaling system in the developing mammalian CNS.Feng L et al
222792232012Time of day regulates subcellular trafficking, tripartite synaptic localization, and polyadenylation of the astrocytic Fabp7 mRNA.Gerstner JR et al
95917791998Correlation of B-FABP and GFAP expression in malignant glioma.Godbout R et al
195876922010Aberrant fatty acid-binding protein-7 gene expression in cutaneous malignant melanoma.Goto Y et al
210598152011Gene expression profiles of estrogen receptor-positive and estrogen receptor-negative breast cancers are detectable in histologically normal breast epithelium.Graham K et al
97315161998Correspondence re: Y.E. Shi et al., Antitumor activity of the novel human breast cancer growth inhibitor, mammary-derived growth inhibitor-related gene, MRG. Cancer Res., 57: 3084-3091, 1997.Hohoff C et al
195546142010Association analyses between brain-expressed fatty-acid binding protein (FABP) genes and schizophrenia and bipolar disorder.Iwayama Y et al
96715821998POU transcription factors control expression of CNS stem cell-specific genes.Josephson R et al
174155242007FABP7 expression in glioblastomas: relation to prognosis, invasion and EGFR status.Kaloshi G et al
79568381994The expression pattern of a novel gene encoding brain-fatty acid binding protein correlates with neuronal and glial cell development.Kurtz A et al
166239522006Nuclear FABP7 immunoreactivity is preferentially expressed in infiltrative glioma and is associated with poor prognosis in EGFR-overexpressing glioblastoma.Liang Y et al
158271232005Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme.Liang Y et al
194686902009Molecular properties of CD133+ glioblastoma stem cells derived from treatment-refractory recurrent brain tumors.Liu Q et al
223228852012A fatty acid-binding protein 7/RXRβ pathway enhances survival and proliferation in triple-negative breast cancer.Liu RZ et al
225838992012Regulation of the FABP7 gene by PAX6 in malignant glioma cells.Liu RZ et al
200575062010Polymorphism screening of brain-expressed FABP7, 5 and 3 genes and association studies in autism and schizophrenia in Japanese subjects.Maekawa M et al
208340422010Brain fatty acid-binding protein and omega-3/omega-6 fatty acids: mechanistic insight into malignant glioma cell migration.Mita R et al
178988692007B-FABP-expressing radial glial cells: the malignant glioma cell of origin?Mita R et al
190146102008The influence of feeding linoleic, gamma-linolenic and docosahexaenoic acid rich oils on rat brain tumor fatty acids composition and fatty acid binding protein 7 mRNA expression.Nasrollahzadeh J et al
200827102010Downstream genes of Pax6 revealed by comprehensive transcriptome profiling in the developing rat hindbrain.Numayama-Tsuruta K et al
168820152006Altered emotional behavioral responses in mice lacking brain-type fatty acid-binding protein gene.Owada Y et al
152179912004Brain- and heart-type fatty acid-binding proteins in the brain: tissue distribution and clinical utility.Pelsers MM et al
127712032003Overexpression of FABP7 in Down syndrome fetal brains is associated with PKNOX1 gene-dosage imbalance.Sánchez-Font MF et al
158921672005Identification of fatty acid binding proteins as markers associated with the initiation and/or progression of renal cell carcinoma.Seliger B et al
92424291997Antitumor activity of the novel human breast cancer growth inhibitor, mammary-derived growth inhibitor-related gene, MRG.Shi YE et al
188266022008The fatty acid binding protein 7 (FABP7) is involved in proliferation and invasion of melanoma cells.Slipicevic A et al
217713202011Analysis of the regulation of fatty acid binding protein 7 expression in human renal carcinoma cell lines.Takaoka N et al
196083522010Overexpression of fatty acid binding protein-7 correlates with basal-like subtype of breast cancer.Tang XY et al
173206552007Detection of transcript for brain-type fatty Acid-binding protein in tumor and urine of patients with renal cell carcinoma.Teratani T et al
211433412011Brain-specific fatty acid-binding protein is elevated in serum of patients with dementia-related diseases.Teunissen CE et al
196221562009Brain-type and liver-type fatty acid-binding proteins: new tumor markers for renal cancer?Tölle A et al
213998752011Importance of brain‑type fatty acid binding protein for cell-biological processes in human renal carcinoma cells.Tölle A et al
227761582012Tissue-specific differential induction of duplicated fatty acid-binding protein genes by the peroxisome proliferator, clofibrate, in zebrafish (Danio rerio).Venkatachalam AB et al
111038172000Induction of mammary differentiation by mammary-derived growth inhibitor-related gene that interacts with an omega-3 fatty acid on growth inhibition of breast cancer cells.Wang M et al
180011492007Fabp7 maps to a quantitative trait locus for a schizophrenia endophenotype.Watanabe A et al
158346502005Release of brain-type and heart-type fatty acid-binding proteins in serum after acute ischaemic stroke.Wunderlich MT et al
195909502010The proteins FABP7 and OATP2 are associated with the basal phenotype and patient outcome in human breast cancer.Zhang H et al
159003002005Analysis of differential gene expression in human melanocytic tumour lesions by custom made oligonucleotide arrays.de Wit NJ et al

Other Information

Locus ID:

NCBI: 2173
MIM: 602965
HGNC: 3562
Ensembl: ENSG00000164434

Variants:

dbSNP: 2173
ClinVar: 2173
TCGA: ENSG00000164434
COSMIC: FABP7

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000164434ENST00000356535O15540
ENSG00000164434ENST00000368444O15540

Expression (GTEx)

0
50
100
150

Pathways

PathwaySourceExternal ID
PPAR signaling pathwayKEGGko03320
PPAR signaling pathwayKEGGhsa03320
MetabolismREACTOMER-HSA-1430728
Metabolism of lipids and lipoproteinsREACTOMER-HSA-556833
Lipid digestion, mobilization, and transportREACTOMER-HSA-73923
Hormone-sensitive lipase (HSL)-mediated triacylglycerol hydrolysisREACTOMER-HSA-163560

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
158271232005Gene expression profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme.185
205639942010Fatty acid binding proteins in brain development and disease.38
232848882012A radial glia gene marker, fatty acid binding protein 7 (FABP7), is involved in proliferation and invasion of glioblastoma cells.33
178988692007B-FABP-expressing radial glial cells: the malignant glioma cell of origin?30
208340422010Brain fatty acid-binding protein and omega-3/omega-6 fatty acids: mechanistic insight into malignant glioma cell migration.29
249326362014The nuclear receptor REV-ERBα regulates Fabp7 and modulates adult hippocampal neurogenesis.29
174155242007FABP7 expression in glioblastomas: relation to prognosis, invasion and EGFR status.22
195408482009Nuclear factor I regulates brain fatty acid-binding protein and glial fibrillary acidic protein gene expression in malignant glioma cell lines.22
166239522006Nuclear FABP7 immunoreactivity is preferentially expressed in infiltrative glioma and is associated with poor prognosis in EGFR-overexpressing glioblastoma.20
185934732008Reelin induces a radial glial phenotype in human neural progenitor cells by activation of Notch-1.20

Citation

Roseline Godbout ; Ho-Yin Poon ; Rong-Zong Liu

FABP7 (fatty acid binding protein 7, brain)

Atlas Genet Cytogenet Oncol Haematol. 2014-01-01

Online version: http://atlasgeneticsoncology.org/gene/46256/fabp7