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FGFR3 (Fibroblast Growth Factor Receptor 3)

Identity

HGNC (Hugo) FGFR3
Location 4p16.3
Location_base_pair Starts at 1764837 and ends at 1780396 bp from pter ( according to hg18-Mar_2006)  [Mapping]
Local_order centromere - IT 15 - FGFR 3 - IDUA - MYL 5 - ZNF 141 - telomere

DNA/RNA

 
  c-FGFR3 (4p16.3) in normal cells: PAC 1054L13 (above) and PAC 1174P18 (below) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi
Description 16.5 Kb; 19 exons; exon 1 unknown in human
Transcription 4.0 Kb mRNA; large 3' untranslated region (1.4 kb); alternative splicing of exons 7 and 8 gives rise to two isoforms IIIb and IIIc

Protein

 
  Protein Diagram
Description 806 amino acids; 115 kDa; tyrosine kinase receptor; contains three major domains: an extracellular domain with 3 Ig-like loops, a highly hydrophobic transmembrane domain (22 amino acids) and an intracellular domain with tyrosine kinase activity
Expression mostly in brain, cartilage, liver, inner ear, kidney
Localisation plasma membrane
Function FGF receptor with tyrosine kinase activity; binding of ligand (FGF) induces receptor dimerization, autophosphorylation and signal transduction
Homology with other FGFR (1, 2 and 4); Cek 2 in chicken

Implicated in

Entity t(4;14)(p16.3;q32.3)/multiple myeloma --> FGFR3 -IgH
Disease plasma cell leukaemia and multiple myeloma
Prognosis unknown: found in 11 cases, but with no data on clinics
Abnormal Protein no fusion protein, but promoter exchange between both partner genes
Oncogenesis overexpression and activation of FGFR 3 provides an oncogenic signal
  
Entity squeletal dysplasia (inborn diseases)
Disease hypochondroplasia, achondroplasia, thanatophoric dwarfism (TD I and II), Crouzon syndrome with acanthosis nigricans and coronal craniosynostosis; endochondral and membranous ossification defects are caused by recurrent missense mutations
  

Breakpoints

 
Note Chromosome 4 breakpoints are clustured in a 50-70 kb region centromeric to FGFR 3

External links

Nomenclature
HGNC (Hugo)FGFR3   3690
Entrez_Gene (NCBI)FGFR3  2261  fibroblast growth factor receptor 3
Cards
AtlasFGFR99
GeneCards (Weizmann)FGFR3
Ensembl (Hinxton)ENSG00000068078 [Gene_View]  FGFR3 [Vega]
AceView (NCBI)FGFR3
Genatlas (Paris)FGFR3
euGene (Indiana)2261
SOURCE (Stanford)NM_000142 NM_022965
Genomic and cartography
GoldenPath (UCSC)FGFR3  -  4p16.3   chr4:1764837-1780396 +  4p16.3   [Description]    (hg18-Mar_2006)
EnsemblFGFR3 - 4p16.3 [CytoView]
Mapping of homologs : NCBIFGFR3 [Mapview]
OMIM100800   109800   134934   146000   149730   162900   187600   602849   603956   610474   612247   
Gene and transcription
Gene : Genbank (Entrez)AB209441 AF238374 AF245114 AF369211 AF369212
Reference sequence (RefSeq transcript) :SRSNM_000142 NM_022965
Reference transcript : EntrezNM_000142 NM_022965
RefSeq genomic : SRSAC_000047 AC_000136 NC_000004 NT_006081 NW_001838896 NW_921918
RefSeq genomic : EntrezAC_000047 AC_000136 NC_000004 NT_006081 NW_001838896 NW_921918
Consensus coding sequences : CCDS NCBIFGFR3
Cluster EST : UnigeneHs.1420 [ SRS ] Hs.1420 [ NCBI ]
Alternative Splicing : Fast-db (Paris)1069
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP22607 (SRS) P22607 (Expasy) P22607 (Uniprot)
With graphics : InterProP22607
Splice isoforms : VarSplice FASTAP22607(VarSplice FASTA)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)   
Domain pattern : Prosite (Expaxy)IG_LIKE (PS50835)    PROTEIN_KINASE_ATP (PS00107)    PROTEIN_KINASE_DOM (PS50011)    PROTEIN_KINASE_TYR (PS00109)   
Domains : Interpro (SRS)Fibroblast_GF_rcpt    Ig    Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Prot_kinase_core    Protein_kinase_ATP_bd_CS    Tyr_pkinase    Tyr_pkinase_AS   
Domains : Interpro (EBI)Fibroblast_GF_rcpt    Ig    Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Prot_kinase_core    Protein_kinase_ATP_bd_CS    Tyr_pkinase    Tyr_pkinase_AS   
Related proteins : CluSTrP22607
Domain families : Pfam SRSI-set (PF07679)    ig (PF00047)    Pkinase_Tyr (PF07714)   
Domain families : Pfam SangerI-set (PF07679)    ig (PF00047)    Pkinase_Tyr (PF07714)   
Domain families : Pfam NCBIpfam07679    pfam00047    pfam07714   
Domain families : Smart EMBLIG (SM00409)IGc2 (SM00408)TyrKc (SM00219)
Domain structure : Prodom (Prabi Lyon)Prot_kinase (PD000001)   
Blocks (Seattle)P22607
Crystal structure of protein : PDB SRS1RY7   
Crystal structure of protein : PDBSum1RY7   
Crystal structure of protein : IMB1RY7   
Crystal structure of protein : PDB RSDB1RY7   
HPRD00624
Protein Interaction databases
DIP (DOE-UCLA)P22607
IntAct (EBI)P22607
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIFGFR3
SNP : GeneSNP UtahFGFR3
SNP : HGBaseFGFR3
Genetic variants : HAPMAPFGFR3
Somatic Mutations in Cancer : COSMICFGFR3 
Translocation Breakpoints in Cancer : TICdbFGFR3 
Mutations and Diseases : HGMDFGFR3
Hereditary diseases : OMIM100800    109800    134934    146000    149730    162900    187600    602849    603956    610474    612247   
Hereditary diseases : GENETests100800    109800    134934    146000    149730    162900    187600    602849    603956    610474    612247   
Diseases : Genetic AssociationFGFR3
General knowledge
Homologs : HomoloGeneFGFR3
Homology/Alignments : Family Browser UCSCFGFR3
Phylogenetic Trees/Animal Genes : TreeFamFGFR3
Catalytic activity : Enzyme2.7.10.1 [ Enzyme-Expasy ]   2.7.10.1 [ Enzyme-SRS ]   2.7.10.1 [ IntEnz-EBI ]   2.7.10.1 [ BRENDA ]   2.7.10.1 [ KEGG ]   
Chemical/Protein Interactions : CTD2261
Keywords Ontology : AmiGOMAPKKK cascade  nucleotide binding  skeletal system development  receptor activity  fibroblast growth factor receptor activity  ATP binding  plasma membrane  integral to plasma membrane  protein amino acid phosphorylation  JAK-STAT cascade  sensory perception of sound  fibroblast growth factor receptor signaling pathway  cell growth  transferase activity  identical protein binding  
Keywords Ontology : EGO-EBIMAPKKK cascade  nucleotide binding  skeletal system development  receptor activity  fibroblast growth factor receptor activity  ATP binding  plasma membrane  integral to plasma membrane  protein amino acid phosphorylation  JAK-STAT cascade  sensory perception of sound  fibroblast growth factor receptor signaling pathway  cell growth  transferase activity  identical protein binding  
Pathways : BIOCARTA
Pathways : KEGGMAPK signaling pathwayRegulation of actin cytoskeleton
Other databases
Probes
ProbeFGFR3 (4p16.3) in normal cells (Bari)
Probes : ImagenesFGFR3 Related clones (RZPD - Berlin)
Literature
PubMed214 Pubmed reference(s) in Entrez
PubGeneFGFR3

Bibliography

Mutations in the gene encoding fibroblast growth factor receptor-3 in achondroplasia.
Rousseau F, Bonaventure J, Legeai-Mallet L, Pelet A, Rozet JM, Maroteaux P, Le Merrer M, Munnich A
Nature. 1994 ; 371 (6494) : 252-254.
PMID 8078586
 
FGFR activation in skeletal disorders: too much of a good thing.
Webster MK, Donoghue DJ
Trends in genetics : TIG. 1997 ; 13 (5) : 178-182.
PMID 9154000
 
Frequent translocation t(4;14)(p16.3;q32.3) in multiple myeloma is associated with increased expression and activating mutations of fibroblast growth factor receptor 3.
Chesi M, Nardini E, Brents LA, Schrˆck E, Ried T, Kuehl WM, Bergsagel PL
Nature genetics. 1997 ; 16 (3) : 260-264.
PMID 9207791
 
A novel chromosomal translocation t(4; 14)(p16.3; q32) in multiple myeloma involves the fibroblast growth-factor receptor 3 gene.
Richelda R, Ronchetti D, Baldini L, Cro L, Viggiano L, Marzella R, Rocchi M, Otsuki T, Lombardi L, Maiolo AT, Neri A
Blood. 1997 ; 90 (10) : 4062-4070.
PMID 9354676
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written02-1998Jacky Bonaventure
Unité INSERM 393, Hopital Necker-Enfants Malades 149 rue de Sèvres 75743 Paris Cedex 15, France

Citation

This paper should be referenced as such :
Bonaventure J . FGFR3 (Fibroblast Growth Factor Receptor 3). Atlas Genet Cytogenet Oncol Haematol. February 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/FGFR99.html

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indexed on : Sat Jun 27 16:39:03 CEST 2009

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