GAS5 (growth arrest-specific 5 (non-protein coding))
2009-10-01 Mirna Mourtada-Maarabouni   AffiliationInstitute for Science, Technology in Medicine, Huxley Building, Keele University, Keele, Staffordshire ST5 5BG, UK
Identity
HGNC
LOCATION
1q25.1
LOCUSID
ALIAS
NCRNA00030,SNHG2
FUSION GENES
DNA/RNA

Representation of five of GAS5 splice variants. Boxes numbered 2 to12 represent exons. U79, U80, U47, U81 and U74 represent the box C/D small nucleolar RNAs (snoRNAs). Horizontal lines represent the intronic sequences. Exons, introns and snoRNAs are not drawn to scale (IMAGE clone 6194071, 1249 bp; IMAGE clone 2598129, 1270 bp; IMAGE clone 3585621, 1396 bp; Gas5 3A, 1802 bp; IMAGE clone 5739605, 1802 bp; IMAGE clone 2761825, 1802 bp).
Description
The gene spans about 4.98 Kb. Orientation minus strand. Number of exons: 12. GenBank: AF141346.1. GAS5 gene hosts multiple small nucleolar RNA (snoRNA) host gene similar to UHG (U22 host gene) which encode, within the 11 introns of the human GAS5 gene, ten box C/D snoRNAs predicted to play a role in the 2-O-methylation of rRNA. Its 5 end sequence contains an oligopyrimidine tract characteristic of the 5-TOP class of genes.
Transcription
The length of GAS5 transcript is 651bp (NR_002578 in GenBank). The 5 end sequence of the GAS5 transcript contains an oligopyrimidine tract characteristic of the 5-TOP class of genes. GAS5 transcripts display several patterns of alternate splicing. The initial GAS5 transcript is subject to complex post-transcriptional processing resulting in several splice variants. However its putative open reading frame is small and poorly conserved during even relatively short periods of evolution, as demonstrated by a number of disruptions caused by frameshift mutations in several mouse strains, and by an interruption by a stop codon after the first 13 amino acids in rat GAS5. The diagram above shows some of GAS5 splice variants which are reported to affect cell fate in different ways.
Proteins
Note
GAS5 exons do not encode a polypeptide product.
Implicated in
Entity name
Regulation of cell growth
Note
The GAS5 gene was isolated from NIH 3T3 cells using subtraction hybridisation, in a screen intended to isolate potential tumor suppressor genes. GAS5 is reported to be ubiquitously expressed during mouse development and adult life, and also to be expressed only at low levels in actively growing Friend leukemia and NIH 3T3 cells, with substantially increased abundance in cells grown to saturation density. The RNA levels of GAS5 appear to be regulated primarily through changes in its rate of degradation rather than through changes in its transcription rate. GAS5 RNA abundance was also found to be increased by amino acid deprivation. Studies also have shown that GAS5 is necessary and sufficient for growth arrest in both untransformed and leukaemic lymphocytes.
Entity name
Systemic lupus erythematosus
Note
The GAS5 gene is located in the disease susceptibility locus in mouse BXSB strain, which develops glomerulonephritis associated with systemic lupus erythematosus (SLE). Subsequent studies involving genetic analysis of a mouse model of SLE have indicated that GAS5 may well be involved in its pathology. Besides, the human chromosomal locus 1q25 at which the GAS5 gene is encoded has been associated with SLE in genetic studies in humans.
Entity name
Apoptosis/cell cycle regulation
Note
A fragment of GAS5 cDNA has been isolated from a retroviral cDNA expression library by using an unbiased functional screen for genes that control apoptosis in lymphocytes. Further studies have shown that GAS5 plays an essential role in normal growth arrest in both T-cell lines and non-transformed lymphocytes. Overexpression of GAS5 causes both an enhancement in apoptosis and a decrease in the rate of progression through the cell cycle in leukeamic T cell lines and primary lymphocytes. Consistent with this, downregulation of endogenous GAS5 inhibits apoptosis and maintains a more rapid cell cycle, indicating that GAS5 expression is both essential and sufficient for normal growth arrest in T-cell lines as well as human peripheral blood T-cells. Overexpression of certain GAS5 transcripts is reported to induce growth arrest and apoptosis in several mammalian cell lines.
Entity name
Oncogenesis
Note
GAS5 is encoded at 1q25, a locus displaying abnormalities in a number of cancers, e.g. melanoma, prostate, breast, and several types of leukaemia and lymphoma. Gene expression analysis has shown that GAS5 is up-regulated 3.3-fold (the greatest up-regulation for any gene in the whole-genome array) by oncogenic kinases associated with myeloproliferative disorders. Chromosomal rearrangements involving GAS5 have also been identified in a human B-cell lymphoma. GAS5 expression levels are reported to regulate both the induction of apoptosis and cell cycle arrest in T-cell lines and non-transformed lymphocytes, suggesting that it may be very significant in the development of leukaemia and lymphoma. Overexpression of certain GAS5 transcripts is reported to induce growth arrest and apoptosis in several human cell lines, including human breast cancer cell lines. GAS5 expression is significantly downregulated in breast cancer tissue compared with those found in untransformed breast epithelial tissue from the same patients, a clear reduction of more than 65% was observed in this study, suggesting that the reduction in GAS5 expression is an early event in oncogenesis.
Article Bibliography
| Pubmed ID | Last Year | Title | Authors |
|---|
Other Information
Locus ID:
NCBI: 60674
MIM: 608280
HGNC: 16355
Ensembl: ENSG00000234741
Variants:
dbSNP: 60674
ClinVar: 60674
TCGA: ENSG00000234741
COSMIC: GAS5
RNA/Proteins
Expression (GTEx)
References
| Pubmed ID | Year | Title | Citations |
|---|---|---|---|
| 37855286 | 2024 | Serum Levels of Long Non-coding RNAs NEAT1, GAS5, and GAPLINC Altered in Rheumatoid Arthritis. | 1 |
| 38197962 | 2024 | Expression profiles of the lncRNA antisense GAS5-AS1 in colon biopsies from pediatric inflammatory bowel disease patients and its role in regulating sense transcript GAS5. | 0 |
| 38413635 | 2024 | The lncRNAs Gas5, MALAT1 and SNHG8 as diagnostic biomarkers for epithelial malignant pleural mesothelioma in Egyptian patients. | 0 |
| 37855286 | 2024 | Serum Levels of Long Non-coding RNAs NEAT1, GAS5, and GAPLINC Altered in Rheumatoid Arthritis. | 1 |
| 38197962 | 2024 | Expression profiles of the lncRNA antisense GAS5-AS1 in colon biopsies from pediatric inflammatory bowel disease patients and its role in regulating sense transcript GAS5. | 0 |
| 38413635 | 2024 | The lncRNAs Gas5, MALAT1 and SNHG8 as diagnostic biomarkers for epithelial malignant pleural mesothelioma in Egyptian patients. | 0 |
| 36460802 | 2023 | GAS5 attenuates the malignant progression of glioma stem-like cells by promoting E-cadherin. | 4 |
| 36585014 | 2023 | [Study of the association of lncRNA-GAS5 gene polymorphisms with systemic lupus erythematosus in Guangxi population]. | 0 |
| 36645633 | 2023 | lncR-GAS5 upregulates the splicing factor SRSF10 to impair endothelial autophagy, leading to atherogenesis. | 5 |
| 36693551 | 2023 | LncRNA GAS5 suppresses inflammatory responses by inhibiting HMGB1 release via miR-155-5p/SIRT1 axis in sepsis. | 6 |
| 36731007 | 2023 | lncRNA GAS5 and RUNX1 Genes in Children With Primary Immune Thrombocytopenia. | 0 |
| 36773978 | 2023 | Association of the lncRNA-GAS5 promoter region rs145204276 polymorphism with sevoflurane maintenance anesthesia outcomes on patients undergoing laparoscopic cholecystectomy. | 0 |
| 37094852 | 2023 | LncRNA GAS5 Regulates Gemcitabine Resistance in Pancreatic Carcinoma by Targeting miRNA-21. | 1 |
| 37198993 | 2023 | LncRNA GAS5 as an Inflammatory Regulator Acting through Pathway in Human Lupus. | 0 |
| 37482855 | 2023 | Long Noncoding Rna GAS5 And Mir-137 And Two Of Their Genetic Polymorphisms Contribute To Acute Ischaemic Stroke Risk In An Egyptian Population. | 1 |
Citation
Mirna Mourtada-Maarabouni
GAS5 (growth arrest-specific 5 (non-protein coding))
Atlas Genet Cytogenet Oncol Haematol. 2009-10-01
Online version: http://atlasgeneticsoncology.org/gene/50217/gas5
