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ADAMTS7 (ADAM metallopeptidase with thrombospondin type 1 motif, 7)

Identity

Other namesADAM-TS7
DKFZp434H204
HGNC (Hugo) ADAMTS7
Location 15q25.1
Location_base_pair Starts at 76838600 and ends at 76890828 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ADAMTS7   223
Entrez_Gene (NCBI)ADAMTS7  11173  ADAM metallopeptidase with thrombospondin type 1 motif, 7
Cards
GeneCards (Weizmann)ADAMTS7
Ensembl (Hinxton)ENSG00000136378 [Gene_View]  ADAMTS7 [Vega]
AceView (NCBI)ADAMTS7
Genatlas (Paris)ADAMTS7
euGene (Indiana)11173
SOURCE (Stanford)NM_014272
Gene Expression (Array Express) ENSG00000136378
Genomic and cartography
GoldenPath (UCSC)ADAMTS7  -  15q25.1   chr15:76838600-76890828 -  15q25.1   [Description]    (hg18-March_2006)
EnsemblADAMTS7 - 15q25.1 [CytoView]
Mapping of homologs : NCBIADAMTS7 [Mapview]
OMIM605009   
Gene and transcription
Gene : Genbank (Entrez)AB209497 AF140675 AK299844 AL110226 AL359934
Reference sequence (RefSeq transcript) :SRSNM_014272
Reference transcript : EntrezNM_014272
RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NG_011492 NT_010194 NW_001838219 NW_925907
RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NG_011492 NT_010194 NW_001838219 NW_925907
Consensus coding sequences : CCDS NCBIADAMTS7
Cluster EST : UnigeneHs.16441 [ SRS ] Hs.16441 [ NCBI ]
Alternative Splicing : Fast-db (Paris)8985
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9UKP4 (SRS) Q9UKP4 (Expasy) Q9UKP4 (Uniprot)
With graphics : InterProQ9UKP4
Splice isoforms : VarSplice FASTAQ9UKP4(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ADAM_MEPRO (PS50215)    CYSTEINE_SWITCH (PS00546)    DISINTEGRIN_1 (PS00427)    DISINTEGRIN_2 (PS50214)    PLAC (PS50900)    TSP1 (PS50092)    ZINC_PROTEASE (PS00142)   
Domain pattern : Prosite (Expaxy)ADAM_MEPRO (PS50215)    CYSTEINE_SWITCH (PS00546)    DISINTEGRIN_1 (PS00427)    DISINTEGRIN_2 (PS50214)    PLAC (PS50900)    TSP1 (PS50092)    ZINC_PROTEASE (PS00142)   
Domains : Interpro (SRS)ADAM_spacer1    Peptidase_M12B    Peptidase_M12B_ADAM-TS    Peptidase_M12B_N    PLAC    Thrombospondin_1_rpt   
Domains : Interpro (EBI)ADAM_spacer1    Peptidase_M12B    Peptidase_M12B_ADAM-TS    Peptidase_M12B_N    PLAC    Thrombospondin_1_rpt   
Related proteins : CluSTrQ9UKP4
Domain families : Pfam SRSADAM_spacer1 (PF05986)    Pep_M12B_propep (PF01562)    Reprolysin (PF01421)    TSP_1 (PF00090)   
Domain families : Pfam SangerADAM_spacer1 (PF05986)    Pep_M12B_propep (PF01562)    Reprolysin (PF01421)    TSP_1 (PF00090)   
Domain families : Pfam NCBIpfam05986    pfam01562    pfam01421    pfam00090   
Domain families : Smart EMBLTSP1 (SM00209)  
Blocks (Seattle)Q9UKP4
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD05422
Protein Interaction databases
DIP (DOE-UCLA)Q9UKP4
IntAct (EBI)Q9UKP4
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIADAMTS7
SNP : GeneSNP UtahADAMTS7
SNP : HGBaseADAMTS7
Genetic variants : HAPMAPADAMTS7
Somatic Mutations in Cancer : COSMICADAMTS7 
Mutations and Diseases : HGMDADAMTS7
Hereditary diseases : OMIM605009   
Hereditary diseases : GENETests605009   
Diseases : Genetic AssociationADAMTS7
General knowledge
Homologs : HomoloGeneADAMTS7
Homology/Alignments : Family Browser UCSCADAMTS7
Phylogenetic Trees/Animal Genes : TreeFamADAMTS7
Catalytic activity : Enzyme3.4.24.- [ Enzyme-Expasy ]   3.4.24.- [ Enzyme-SRS ]   3.4.24.- [ IntEnz-EBI ]   3.4.24.- [ BRENDA ]   3.4.24.- [ KEGG ]   
Chemical/Protein Interactions : CTD11173
Keywords Ontology : AmiGOmetalloendopeptidase activity  extracellular region  proteinaceous extracellular matrix  proteolysis  peptidase activity  zinc ion binding  metal ion binding  
Keywords Ontology : EGO-EBImetalloendopeptidase activity  extracellular region  proteinaceous extracellular matrix  proteolysis  peptidase activity  zinc ion binding  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesADAMTS7 Related clones (RZPD - Berlin)
Literature
PubMed6 Pubmed reference(s) in Entrez
PubGeneADAMTS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:43:55 CET 2010
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