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ADAMTSL3 (ADAMTS-like 3)

Identity

Other namesKIAA1233
MGC150716
MGC150717
HGNC (Hugo) ADAMTSL3
Location 15q25.2
Location_base_pair Starts at 82113842 and ends at 82499597 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ADAMTSL3   14633
Entrez_Gene (NCBI)ADAMTSL3  57188  ADAMTS-like 3
Cards
GeneCards (Weizmann)ADAMTSL3
Ensembl (Hinxton)ENSG00000156218 [Gene_View]  ADAMTSL3 [Vega]
AceView (NCBI)ADAMTSL3
Genatlas (Paris)ADAMTSL3
euGene (Indiana)57188
SOURCE (Stanford)NM_207517
Gene Expression (Array Express) ENSG00000156218
Genomic and cartography
GoldenPath (UCSC)ADAMTSL3  -  15q25.2   chr15:82113842-82499597 +  15q25.2   [Description]    (hg18-March_2006)
EnsemblADAMTSL3 - 15q25.2 [CytoView]
Mapping of homologs : NCBIADAMTSL3 [Mapview]
OMIM609199   
Gene and transcription
Gene : Genbank (Entrez)AB033059 AF237652 AK092324 AK308845 AL109723
Reference sequence (RefSeq transcript) :SRSNM_207517
Reference transcript : EntrezNM_207517
RefSeq genomic : SRSAC_000058 AC_000147 NC_000015 NT_077661 NW_001838221 NW_925918
RefSeq genomic : EntrezAC_000058 AC_000147 NC_000015 NT_077661 NW_001838221 NW_925918
Consensus coding sequences : CCDS NCBIADAMTSL3
Cluster EST : UnigeneHs.459162 [ SRS ] Hs.459162 [ NCBI ]
Alternative Splicing : Fast-db (Paris)9524
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP82987 (SRS) P82987 (Expasy) P82987 (Uniprot)
With graphics : InterProP82987
Splice isoforms : VarSplice FASTAP82987(VarSplice FASTA)
Domaine pattern : Prosite (SRS)IG_LIKE (PS50835)    PLAC (PS50900)    TSP1 (PS50092)   
Domain pattern : Prosite (Expaxy)IG_LIKE (PS50835)    PLAC (PS50900)    TSP1 (PS50092)   
Domains : Interpro (SRS)Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Peptidase_M12B_ADAM-TS    PLAC    Thrombospondin_1_rpt   
Domains : Interpro (EBI)Ig-like    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Peptidase_M12B_ADAM-TS    PLAC    Thrombospondin_1_rpt   
Related proteins : CluSTrP82987
Domain families : Pfam SRSI-set (PF07679)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam SangerI-set (PF07679)    PLAC (PF08686)    TSP_1 (PF00090)   
Domain families : Pfam NCBIpfam07679    pfam08686    pfam00090   
Domain families : Smart EMBLIG (SM00409)  IGc2 (SM00408)  TSP1 (SM00209)  
Blocks (Seattle)P82987
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD12426
Protein Interaction databases
DIP (DOE-UCLA)P82987
IntAct (EBI)P82987
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIADAMTSL3
SNP : GeneSNP UtahADAMTSL3
SNP : HGBaseADAMTSL3
Genetic variants : HAPMAPADAMTSL3
Somatic Mutations in Cancer : COSMICADAMTSL3 
Mutations and Diseases : HGMDADAMTSL3
Hereditary diseases : OMIM609199   
Hereditary diseases : GENETests609199   
Diseases : Genetic AssociationADAMTSL3
General knowledge
Homologs : HomoloGeneADAMTSL3
Homology/Alignments : Family Browser UCSCADAMTSL3
Phylogenetic Trees/Animal Genes : TreeFamADAMTSL3
Chemical/Protein Interactions : CTD57188
Keywords Ontology : AmiGOextracellular region  proteinaceous extracellular matrix  peptidase activity  metallopeptidase activity  zinc ion binding  
Keywords Ontology : EGO-EBIextracellular region  proteinaceous extracellular matrix  peptidase activity  metallopeptidase activity  zinc ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesADAMTSL3 Related clones (RZPD - Berlin)
Literature
PubMed12 Pubmed reference(s) in Entrez
PubGeneADAMTSL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:39:04 CET 2010
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