Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ANGPT4 (angiopoietin 4)

Identity

Other namesAGP4
ANG-3
ANG4
MGC138181
MGC138183
HGNC (Hugo) ANGPT4
Location 20p13
Location_base_pair Starts at 801297 and ends at 844960 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ANGPT4   487
Entrez_Gene (NCBI)ANGPT4  51378  angiopoietin 4
Cards
GeneCards (Weizmann)ANGPT4
Ensembl (Hinxton)ENSG00000101280 [Gene_View]  ANGPT4 [Vega]
AceView (NCBI)ANGPT4
Genatlas (Paris)ANGPT4
euGene (Indiana)51378
SOURCE (Stanford)NM_015985
Gene Expression (Array Express) ENSG00000101280
Genomic and cartography
GoldenPath (UCSC)ANGPT4  -  20p13   chr20:801297-844960 -  20p13   [Description]    (hg18-March_2006)
EnsemblANGPT4 - 20p13 [CytoView]
Mapping of homologs : NCBIANGPT4 [Mapview]
OMIM603705   
Gene and transcription
Gene : Genbank (Entrez)AF074332 AF113708 AK304756 BC111922 BC111976
Reference sequence (RefSeq transcript) :SRSNM_015985
Reference transcript : EntrezNM_015985
RefSeq genomic : SRSAC_000063 AC_000152 NC_000020 NT_011387 NW_001838652 NW_927317
RefSeq genomic : EntrezAC_000063 AC_000152 NC_000020 NT_011387 NW_001838652 NW_927317
Consensus coding sequences : CCDS NCBIANGPT4
Cluster EST : UnigeneHs.278973 [ SRS ] Hs.278973 [ NCBI ]
Alternative Splicing : Fast-db (Paris)1030
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9Y264 (SRS) Q9Y264 (Expasy) Q9Y264 (Uniprot)
With graphics : InterProQ9Y264
Splice isoforms : VarSplice FASTAQ9Y264(VarSplice FASTA)
Domaine pattern : Prosite (SRS)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domain pattern : Prosite (Expaxy)FIBRINOGEN_C_1 (PS00514)    FIBRINOGEN_C_2 (PS51406)   
Domains : Interpro (SRS)Fibrinogen_a/b/g_C    Fibrinogen_a/b/g_C_1    Fibrinogen_CS   
Domains : Interpro (EBI)Fibrinogen_a/b/g_C    Fibrinogen_a/b/g_C_1    Fibrinogen_CS   
Related proteins : CluSTrQ9Y264
Domain families : Pfam SRSFibrinogen_C (PF00147)   
Domain families : Pfam SangerFibrinogen_C (PF00147)   
Domain families : Pfam NCBIpfam00147   
Domain families : Smart EMBLFBG (SM00186)  
Blocks (Seattle)Q9Y264
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD04747
Protein Interaction databases
DIP (DOE-UCLA)Q9Y264
IntAct (EBI)Q9Y264
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIANGPT4
SNP : GeneSNP UtahANGPT4
SNP : HGBaseANGPT4
Genetic variants : HAPMAPANGPT4
Somatic Mutations in Cancer : COSMICANGPT4 
Mutations and Diseases : HGMDANGPT4
Hereditary diseases : OMIM603705   
Hereditary diseases : GENETests603705   
Diseases : Genetic AssociationANGPT4
General knowledge
Homologs : HomoloGeneANGPT4
Homology/Alignments : Family Browser UCSCANGPT4
Phylogenetic Trees/Animal Genes : TreeFamANGPT4
Chemical/Protein Interactions : CTD51378
Keywords Ontology : AmiGOreceptor binding  extracellular region  extracellular space  signal transduction  biological_process  transmembrane receptor protein tyrosine kinase activator activity  
Keywords Ontology : EGO-EBIreceptor binding  extracellular region  extracellular space  signal transduction  biological_process  transmembrane receptor protein tyrosine kinase activator activity  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesANGPT4 Related clones (RZPD - Berlin)
Literature
PubMed15 Pubmed reference(s) in Entrez
PubGeneANGPT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:43:44 CET 2010
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