Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ANKRD40CL (ANKRD40 C-terminal like)

Identity

Other aliasC17orf73
LINC00483
HGNC (Hugo) ANKRD40CL
LocusID (NCBI) 55018
Atlas_Id 80653
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50761034 and ends at 50767557 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ANKRD40CL   26080
Cards
Entrez_Gene (NCBI)ANKRD40CL  55018  ANKRD40 C-terminal like
AliasesC17orf73; LINC00483
GeneCards (Weizmann)ANKRD40CL
Ensembl hg19 (Hinxton)ENSG00000167117 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167117 [Gene_View]  ENSG00000167117 [Sequence]  chr17:50761034-50767557 [Contig_View]  ANKRD40CL [Vega]
ICGC DataPortalENSG00000167117
TCGA cBioPortalANKRD40CL
AceView (NCBI)ANKRD40CL
Genatlas (Paris)ANKRD40CL
WikiGenes55018
SOURCE (Princeton)ANKRD40CL
Genetics Home Reference (NIH)ANKRD40CL
Genomic and cartography
GoldenPath hg38 (UCSC)ANKRD40CL  -     chr17:50761034-50767557 -  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ANKRD40CL  -     17q21.33   [Description]    (hg19-Feb_2009)
GoldenPathANKRD40CL - 17q21.33 [CytoView hg19]  ANKRD40CL - 17q21.33 [CytoView hg38]
ImmunoBaseENSG00000167117
Mapping of homologs : NCBIANKRD40CL [Mapview hg19]  ANKRD40CL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000670 AK000701 AK222717 AK310037 BC128165
RefSeq transcript (Entrez)NM_001358683 NM_017928
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ANKRD40CL
Cluster EST : UnigeneHs.389460 [ NCBI ]
CGAP (NCI)Hs.389460
Alternative Splicing GalleryENSG00000167117
Gene ExpressionANKRD40CL [ NCBI-GEO ]   ANKRD40CL [ EBI - ARRAY_EXPRESS ]   ANKRD40CL [ SEEK ]   ANKRD40CL [ MEM ]
Gene Expression Viewer (FireBrowse)ANKRD40CL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55018
GTEX Portal (Tissue expression)ANKRD40CL
Human Protein AtlasENSG00000167117-ANKRD40CL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53H64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53H64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53H64
Splice isoforms : SwissVarQ53H64
PhosPhoSitePlusQ53H64
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ANKRD40CL
DMDM Disease mutations55018
Blocks (Seattle)ANKRD40CL
SuperfamilyQ53H64
Human Protein Atlas [tissue]ENSG00000167117-ANKRD40CL [tissue]
Peptide AtlasQ53H64
IPIIPI00016737   IPI00884030   
Protein Interaction databases
DIP (DOE-UCLA)Q53H64
IntAct (EBI)Q53H64
FunCoupENSG00000167117
BioGRIDANKRD40CL
STRING (EMBL)ANKRD40CL
ZODIACANKRD40CL
Ontologies - Pathways
QuickGOQ53H64
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkANKRD40CL
Atlas of Cancer Signalling NetworkANKRD40CL
Wikipedia pathwaysANKRD40CL
Orthology - Evolution
OrthoDB55018
GeneTree (enSembl)ENSG00000167117
Phylogenetic Trees/Animal Genes : TreeFamANKRD40CL
HOGENOMQ53H64
Homologs : HomoloGeneANKRD40CL
Homology/Alignments : Family Browser (UCSC)ANKRD40CL
Gene fusions - Rearrangements
Fusion : QuiverANKRD40CL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerANKRD40CL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ANKRD40CL
dbVarANKRD40CL
ClinVarANKRD40CL
1000_GenomesANKRD40CL 
Exome Variant ServerANKRD40CL
ExAC (Exome Aggregation Consortium)ENSG00000167117
GNOMAD BrowserENSG00000167117
Varsome BrowserANKRD40CL
Genetic variants : HAPMAP55018
Genomic Variants (DGV)ANKRD40CL [DGVbeta]
DECIPHERANKRD40CL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisANKRD40CL 
Mutations
ICGC Data PortalANKRD40CL 
TCGA Data PortalANKRD40CL 
Broad Tumor PortalANKRD40CL
OASIS PortalANKRD40CL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDANKRD40CL
BioMutasearch ANKRD40CL
DgiDB (Drug Gene Interaction Database)ANKRD40CL
DoCM (Curated mutations)ANKRD40CL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ANKRD40CL (select a term)
intoGenANKRD40CL
Cancer3DANKRD40CL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETANKRD40CL
MedgenANKRD40CL
Genetic Testing Registry ANKRD40CL
NextProtQ53H64 [Medical]
TSGene55018
GENETestsANKRD40CL
Target ValidationANKRD40CL
Huge Navigator ANKRD40CL [HugePedia]
snp3D : Map Gene to Disease55018
BioCentury BCIQANKRD40CL
ClinGenANKRD40CL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55018
Chemical/Pharm GKB GenePA142672221
Clinical trialANKRD40CL
Miscellaneous
canSAR (ICR)ANKRD40CL (select the gene name)
DataMed IndexANKRD40CL
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineANKRD40CL
EVEXANKRD40CL
GoPubMedANKRD40CL
iHOPANKRD40CL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:19:27 CEST 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.