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ARHGEF9-IT1 (ARHGEF9 intronic transcript 1)

Identity

Alias_namesARHGEF9 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) ARHGEF9-IT1
LocusID (NCBI) 100874355
Atlas_Id 60485
Location Xq11.1  [Link to chromosome band Xq11]
Location_base_pair Starts at 63670196 and ends at 63671502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGEF9-IT1   41401
Cards
Entrez_Gene (NCBI)ARHGEF9-IT1  100874355  ARHGEF9 intronic transcript 1
Aliases
GeneCards (Weizmann)ARHGEF9-IT1
Ensembl hg19 (Hinxton)ENSG00000231729 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231729 [Gene_View]  ENSG00000231729 [Sequence]  chrX:63670196-63671502 [Contig_View]  ARHGEF9-IT1 [Vega]
ICGC DataPortalENSG00000231729
TCGA cBioPortalARHGEF9-IT1
AceView (NCBI)ARHGEF9-IT1
Genatlas (Paris)ARHGEF9-IT1
WikiGenes100874355
SOURCE (Princeton)ARHGEF9-IT1
Genetics Home Reference (NIH)ARHGEF9-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGEF9-IT1  -     chrX:63670196-63671502 -  Xq11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGEF9-IT1  -     Xq11.1   [Description]    (hg19-Feb_2009)
GoldenPathARHGEF9-IT1 - Xq11.1 [CytoView hg19]  ARHGEF9-IT1 - Xq11.1 [CytoView hg38]
ImmunoBaseENSG00000231729
Mapping of homologs : NCBIARHGEF9-IT1 [Mapview hg19]  ARHGEF9-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW138023 BF447335
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGEF9-IT1
Cluster EST : UnigeneHs.677588 [ NCBI ]
CGAP (NCI)Hs.677588
Alternative Splicing GalleryENSG00000231729
Gene ExpressionARHGEF9-IT1 [ NCBI-GEO ]   ARHGEF9-IT1 [ EBI - ARRAY_EXPRESS ]   ARHGEF9-IT1 [ SEEK ]   ARHGEF9-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGEF9-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874355
GTEX Portal (Tissue expression)ARHGEF9-IT1
Human Protein AtlasENSG00000231729-ARHGEF9-IT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARHGEF9-IT1
DMDM Disease mutations100874355
Blocks (Seattle)ARHGEF9-IT1
Human Protein Atlas [tissue]ENSG00000231729-ARHGEF9-IT1 [tissue]
Protein Interaction databases
FunCoupENSG00000231729
BioGRIDARHGEF9-IT1
STRING (EMBL)ARHGEF9-IT1
ZODIACARHGEF9-IT1
Ontologies - Pathways
Huge Navigator ARHGEF9-IT1 [HugePedia]
snp3D : Map Gene to Disease100874355
BioCentury BCIQARHGEF9-IT1
ClinGenARHGEF9-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874355
Clinical trialARHGEF9-IT1
Miscellaneous
canSAR (ICR)ARHGEF9-IT1 (select the gene name)
DataMed IndexARHGEF9-IT1
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGEF9-IT1
EVEXARHGEF9-IT1
GoPubMedARHGEF9-IT1
iHOPARHGEF9-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:19:50 CEST 2019

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