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ARL17A (ADP ribosylation factor like GTPase 17A)

Identity

Alias (NCBI)ARF1P2
ARL17P1
HGNC (Hugo) ARL17A
HGNC Previous nameARF1P2
 ARL17P1
HGNC Previous nameADP-ribosylation factor 1 pseudogene 2
 ADP-ribosylation factor-like 17 pseudogene 1
 ADP-ribosylation factor like GTPase 17A
LocusID (NCBI) 51326
Atlas_Id 60496
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 46516702 and ends at 46579722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL17A (17q21.31) / AGTRAP (1p36.22)ARL17A (17q21.31) / AMZ2P1 (17q24.1)ARL17A (17q21.31) / ARL17A (17q21.31)
ARL17A (17q21.31) / GRHL1 (2p25.1)ARL17A (17q21.31) / NUAK1 (12q23.3)ARL17A (17q21.31) / STEAP4 (7q21.12)
DDX52 (17q12) / ARL17A (17q21.31)FTX (Xq13.2) / ARL17A (17q21.31)GOLGA3 (12q24.33) / ARL17A (17q21.31)
KANSL1 (17q21.31) / ARL17A (17q21.31)PINK1 (1p36.12) / ARL17A (17q21.31)ZNF462 (9q31.2) / ARL17A (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(17;17)(q21;q21) KANSL1/ARL17A
t(17;17)(q21;q21) KANSL1/ARL17A

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ]
  t(17;17)(q12;q21) DDX52/ARL17A
KANSL1/ARL17A (17q21)
KANSL1/ARL17A (17q21)
KANSL1/ARL17A (17q21)
KANSL1/ARL17A (17q21)
KANSL1/ARL17A (17q21)

External links

Nomenclature
HGNC (Hugo)ARL17A   24096
Cards
Entrez_Gene (NCBI)ARL17A    ADP ribosylation factor like GTPase 17A
AliasesARF1P2; ARL17P1
GeneCards (Weizmann)ARL17A
Ensembl hg19 (Hinxton)ENSG00000185829 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185829 [Gene_View]  ENSG00000185829 [Sequence]  chr17:46516702-46579722 [Contig_View]  ARL17A [Vega]
ICGC DataPortalENSG00000185829
TCGA cBioPortalARL17A
AceView (NCBI)ARL17A
Genatlas (Paris)ARL17A
SOURCE (Princeton)ARL17A
Genetics Home Reference (NIH)ARL17A
Genomic and cartography
GoldenPath hg38 (UCSC)ARL17A  -     chr17:46516702-46579722 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL17A  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathARL17A - 17q21.31 [CytoView hg19]  ARL17A - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000185829
genome Data Viewer NCBIARL17A [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AA911712 AB209344 AF086297 AF208864 AF493886
RefSeq transcript (Entrez)NM_001113738 NM_001288811 NM_001288812 NM_001288813 NM_001330244 NM_016632
RefSeq genomic (Entrez)NC_000017 NT_187663
Consensus coding sequences : CCDS (NCBI)ARL17A
Alternative Splicing GalleryENSG00000185829
Gene ExpressionARL17A [ NCBI-GEO ]   ARL17A [ EBI - ARRAY_EXPRESS ]   ARL17A [ SEEK ]   ARL17A [ MEM ]
Gene Expression Viewer (FireBrowse)ARL17A [ Firebrowse - Broad ]
GenevisibleExpression of ARL17A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51326
GTEX Portal (Tissue expression)ARL17A
Human Protein AtlasENSG00000185829-ARL17A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVW1
Splice isoforms : SwissVarQ8IVW1
PhosPhoSitePlusQ8IVW1
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)ARL17_C    P-loop_NTPase    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)    ARL17 (PF15840)   
Domain families : Pfam (NCBI)pfam00025    pfam15840   
Conserved Domain (NCBI)ARL17A
Blocks (Seattle)ARL17A
SuperfamilyQ8IVW1
Human Protein Atlas [tissue]ENSG00000185829-ARL17A [tissue]
Peptide AtlasQ8IVW1
HPRD17424
Protein Interaction databases
DIP (DOE-UCLA)Q8IVW1
IntAct (EBI)Q8IVW1
BioGRIDARL17A
STRING (EMBL)ARL17A
ZODIACARL17A
Ontologies - Pathways
QuickGOQ8IVW1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkARL17A
Atlas of Cancer Signalling NetworkARL17A
Wikipedia pathwaysARL17A
Orthology - Evolution
OrthoDB51326
GeneTree (enSembl)ENSG00000185829
Phylogenetic Trees/Animal Genes : TreeFamARL17A
HOGENOMQ8IVW1
Homologs : HomoloGeneARL17A
Homology/Alignments : Family Browser (UCSC)ARL17A
Gene fusions - Rearrangements
Fusion : QuiverARL17A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL17A [hg38]
dbVarARL17A
ClinVarARL17A
MonarchARL17A
1000_GenomesARL17A 
Exome Variant ServerARL17A
GNOMAD BrowserENSG00000185829
Varsome BrowserARL17A
Genomic Variants (DGV)ARL17A [DGVbeta]
DECIPHERARL17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL17A 
Mutations
ICGC Data PortalARL17A 
TCGA Data PortalARL17A 
Broad Tumor PortalARL17A
OASIS PortalARL17A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL17A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARL17A
Mutations and Diseases : HGMDARL17A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL17A
DgiDB (Drug Gene Interaction Database)ARL17A
DoCM (Curated mutations)ARL17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL17A (select a term)
intoGenARL17A
Cancer3DARL17A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARL17A
MedgenARL17A
Genetic Testing Registry ARL17A
NextProtQ8IVW1 [Medical]
GENETestsARL17A
Target ValidationARL17A
Huge Navigator ARL17A [HugePedia]
ClinGenARL17A
Clinical trials, drugs, therapy
MyCancerGenomeARL17A
Protein Interactions : CTD
Pharm GKB GenePA165431441
Clinical trialARL17A
Miscellaneous
canSAR (ICR)ARL17A (select the gene name)
HarmonizomeARL17A
DataMed IndexARL17A
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL17A
EVEXARL17A
GoPubMedARL17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:46:15 CET 2020
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