Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARLNC1 (androgen receptor regulated long noncoding RNA 1)

Identity

Other aliasLINC02170
PRCAT47
HGNC (Hugo) ARLNC1
LocusID (NCBI) 100996425
Atlas_Id 80512
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 80828735 and ends at 80892596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ARLNC1   53032
Cards
Entrez_Gene (NCBI)ARLNC1  100996425  androgen receptor regulated long noncoding RNA 1
AliasesLINC02170; PRCAT47
GeneCards (Weizmann)ARLNC1
Ensembl hg19 (Hinxton)ENSG00000260896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260896 [Gene_View]  ENSG00000260896 [Sequence]  chr16:80828735-80892596 [Contig_View]  ARLNC1 [Vega]
ICGC DataPortalENSG00000260896
TCGA cBioPortalARLNC1
AceView (NCBI)ARLNC1
Genatlas (Paris)ARLNC1
WikiGenes100996425
SOURCE (Princeton)ARLNC1
Genetics Home Reference (NIH)ARLNC1
Genomic and cartography
GoldenPath hg38 (UCSC)ARLNC1  -     chr16:80828735-80892596 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARLNC1  -     16q23.2   [Description]    (hg19-Feb_2009)
GoldenPathARLNC1 - 16q23.2 [CytoView hg19]  ARLNC1 - 16q23.2 [CytoView hg38]
ImmunoBaseENSG00000260896
Mapping of homologs : NCBIARLNC1 [Mapview hg19]  ARLNC1 [Mapview hg38]
OMIM618053   
Gene and transcription
Genbank (Entrez)AA876610 AK093002 BG166652 BG171753 CR739737
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARLNC1
Alternative Splicing GalleryENSG00000260896
Gene ExpressionARLNC1 [ NCBI-GEO ]   ARLNC1 [ EBI - ARRAY_EXPRESS ]   ARLNC1 [ SEEK ]   ARLNC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARLNC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100996425
GTEX Portal (Tissue expression)ARLNC1
Human Protein AtlasENSG00000260896-ARLNC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARLNC1
DMDM Disease mutations100996425
Blocks (Seattle)ARLNC1
Human Protein Atlas [tissue]ENSG00000260896-ARLNC1 [tissue]
Protein Interaction databases
FunCoupENSG00000260896
BioGRIDARLNC1
STRING (EMBL)ARLNC1
ZODIACARLNC1
Ontologies - Pathways
Huge Navigator ARLNC1 [HugePedia]
snp3D : Map Gene to Disease100996425
BioCentury BCIQARLNC1
ClinGenARLNC1
Clinical trials, drugs, therapy
Protein Interactions : CTD100996425
Clinical trialARLNC1
Miscellaneous
canSAR (ICR)ARLNC1 (select the gene name)
HarmonizomeARLNC1
DataMed IndexARLNC1
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARLNC1
EVEXARLNC1
GoPubMedARLNC1
iHOPARLNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 19:34:43 CEST 2020

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