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ARLNC1 (androgen receptor regulated long noncoding RNA 1)

Identity

Alias (NCBI)LINC02170
PRCAT47
HGNC (Hugo) ARLNC1
LocusID (NCBI) 100996425
Atlas_Id 80512
Location 16q23.2  [Link to chromosome band 16q23]
Location_base_pair Starts at 80828735 and ends at 80892596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)ARLNC1   53032
Cards
Entrez_Gene (NCBI)ARLNC1    androgen receptor regulated long noncoding RNA 1
AliasesLINC02170; PRCAT47
GeneCards (Weizmann)ARLNC1
Ensembl hg19 (Hinxton)ENSG00000260896 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260896 [Gene_View]  ENSG00000260896 [Sequence]  chr16:80828735-80892596 [Contig_View]  ARLNC1 [Vega]
ICGC DataPortalENSG00000260896
TCGA cBioPortalARLNC1
AceView (NCBI)ARLNC1
Genatlas (Paris)ARLNC1
SOURCE (Princeton)ARLNC1
Genetics Home Reference (NIH)ARLNC1
Genomic and cartography
GoldenPath hg38 (UCSC)ARLNC1  -     chr16:80828735-80892596 -  16q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARLNC1  -     16q23.2   [Description]    (hg19-Feb_2009)
GoldenPathARLNC1 - 16q23.2 [CytoView hg19]  ARLNC1 - 16q23.2 [CytoView hg38]
ImmunoBaseENSG00000260896
Genome Data Viewer NCBIARLNC1 [Mapview hg19]  
OMIM618053   
Gene and transcription
Genbank (Entrez)AA876610 AK093002 BG166652 BG171753 CR739737
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)ARLNC1
Gene ExpressionARLNC1 [ NCBI-GEO ]   ARLNC1 [ EBI - ARRAY_EXPRESS ]   ARLNC1 [ SEEK ]   ARLNC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARLNC1 [ Firebrowse - Broad ]
GenevisibleExpression of ARLNC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100996425
GTEX Portal (Tissue expression)ARLNC1
Human Protein AtlasENSG00000260896-ARLNC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARLNC1
Human Protein Atlas [tissue]ENSG00000260896-ARLNC1 [tissue]
Protein Interaction databases
BioGRIDARLNC1
STRING (EMBL)ARLNC1
ZODIACARLNC1
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARLNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:35 CEST 2021

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