Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ARMC9 (armadillo repeat containing 9)

Identity

Alias_symbol (synonym)FLJ12584
KIAA1868
ARM
KU-MEL-1
Other aliasJBTS30
NS21
HGNC (Hugo) ARMC9
LocusID (NCBI) 80210
Atlas_Id 43031
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231198546 and ends at 231345202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARMC9 (2q37.1) / ARMC9 (2q37.1)ARMC9 (2q37.1) / EVL (14q32.2)ARMC9 (2q37.1) / LRRFIP1 (2q37.3)
ARMC9 (2q37.1) / PSMD1 (2q37.1)ARMC9 2q37.1 / EVL 14q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(2;14)(q37;q32) ARMC9/EVL

External links

Nomenclature
HGNC (Hugo)ARMC9   20730
Cards
Entrez_Gene (NCBI)ARMC9  80210  armadillo repeat containing 9
AliasesARM; JBTS30; KU-MEL-1; NS21
GeneCards (Weizmann)ARMC9
Ensembl hg19 (Hinxton)ENSG00000135931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135931 [Gene_View]  ENSG00000135931 [Sequence]  chr2:231198546-231345202 [Contig_View]  ARMC9 [Vega]
ICGC DataPortalENSG00000135931
TCGA cBioPortalARMC9
AceView (NCBI)ARMC9
Genatlas (Paris)ARMC9
WikiGenes80210
SOURCE (Princeton)ARMC9
Genetics Home Reference (NIH)ARMC9
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC9  -     chr2:231198546-231345202 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC9  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathARMC9 - 2q37.1 [CytoView hg19]  ARMC9 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000135931
Mapping of homologs : NCBIARMC9 [Mapview hg19]  ARMC9 [Mapview hg38]
OMIM617612   617622   
Gene and transcription
Genbank (Entrez)AB058771 AK022646 AK027163 AK309395 AY219922
RefSeq transcript (Entrez)NM_001271466 NM_001291656 NM_001352754 NM_001352755 NM_001352756 NM_001352757 NM_001352758 NM_001352759 NM_025139
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC9
Cluster EST : UnigeneHs.744341 [ NCBI ]
CGAP (NCI)Hs.744341
Alternative Splicing GalleryENSG00000135931
Gene ExpressionARMC9 [ NCBI-GEO ]   ARMC9 [ EBI - ARRAY_EXPRESS ]   ARMC9 [ SEEK ]   ARMC9 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80210
GTEX Portal (Tissue expression)ARMC9
Human Protein AtlasENSG00000135931-ARMC9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3E5
Splice isoforms : SwissVarQ7Z3E5
PhosPhoSitePlusQ7Z3E5
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    LisH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)ARMC9
DMDM Disease mutations80210
Blocks (Seattle)ARMC9
SuperfamilyQ7Z3E5
Human Protein Atlas [tissue]ENSG00000135931-ARMC9 [tissue]
Peptide AtlasQ7Z3E5
HPRD07778
IPIIPI00829927   IPI00216484   IPI00003053   IPI00916515   IPI00916087   IPI00916195   IPI00915821   IPI00953532   IPI00916812   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E5
IntAct (EBI)Q7Z3E5
FunCoupENSG00000135931
BioGRIDARMC9
STRING (EMBL)ARMC9
ZODIACARMC9
Ontologies - Pathways
QuickGOQ7Z3E5
Ontology : AmiGOcytoplasm  ciliary basal body  cilium assembly  extracellular exosome  
Ontology : EGO-EBIcytoplasm  ciliary basal body  cilium assembly  extracellular exosome  
NDEx NetworkARMC9
Atlas of Cancer Signalling NetworkARMC9
Wikipedia pathwaysARMC9
Orthology - Evolution
OrthoDB80210
GeneTree (enSembl)ENSG00000135931
Phylogenetic Trees/Animal Genes : TreeFamARMC9
HOGENOMQ7Z3E5
Homologs : HomoloGeneARMC9
Homology/Alignments : Family Browser (UCSC)ARMC9
Gene fusions - Rearrangements
Fusion : MitelmanARMC9/EVL [2q37.1/14q32.2]  
Fusion PortalARMC9 2q37.1 EVL 14q32.2 LUAD
Fusion : QuiverARMC9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC9
dbVarARMC9
ClinVarARMC9
1000_GenomesARMC9 
Exome Variant ServerARMC9
ExAC (Exome Aggregation Consortium)ENSG00000135931
GNOMAD BrowserENSG00000135931
Varsome BrowserARMC9
Genetic variants : HAPMAP80210
Genomic Variants (DGV)ARMC9 [DGVbeta]
DECIPHERARMC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC9 
Mutations
ICGC Data PortalARMC9 
TCGA Data PortalARMC9 
Broad Tumor PortalARMC9
OASIS PortalARMC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARMC9
Mutations and Diseases : HGMDARMC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC9
DgiDB (Drug Gene Interaction Database)ARMC9
DoCM (Curated mutations)ARMC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC9 (select a term)
intoGenARMC9
Cancer3DARMC9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617612    617622   
Orphanet
DisGeNETARMC9
MedgenARMC9
Genetic Testing Registry ARMC9
NextProtQ7Z3E5 [Medical]
TSGene80210
GENETestsARMC9
Target ValidationARMC9
Huge Navigator ARMC9 [HugePedia]
snp3D : Map Gene to Disease80210
BioCentury BCIQARMC9
ClinGenARMC9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80210
Chemical/Pharm GKB GenePA142672581
Clinical trialARMC9
Miscellaneous
canSAR (ICR)ARMC9 (select the gene name)
DataMed IndexARMC9
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC9
EVEXARMC9
GoPubMedARMC9
iHOPARMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:33:04 CET 2019
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