Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATP2C2-AS1 (ATP2C2 antisense RNA 1)

Identity

Alias_symbol (synonym)RP11-517C16.2-001
Other alias-
HGNC (Hugo) ATP2C2-AS1
LocusID (NCBI) 105371374
Atlas_Id 79337
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 84459259 and ends at 84467361 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATP2C2-AS1   53167
Cards
Entrez_Gene (NCBI)ATP2C2-AS1  105371374  ATP2C2 antisense RNA 1
Aliases
GeneCards (Weizmann)ATP2C2-AS1
Ensembl hg19 (Hinxton)ENSG00000261286 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261286 [Gene_View]  ENSG00000261286 [Sequence]  chr16:84459259-84467361 [Contig_View]  ATP2C2-AS1 [Vega]
ICGC DataPortalENSG00000261286
TCGA cBioPortalATP2C2-AS1
AceView (NCBI)ATP2C2-AS1
Genatlas (Paris)ATP2C2-AS1
WikiGenes105371374
SOURCE (Princeton)ATP2C2-AS1
Genetics Home Reference (NIH)ATP2C2-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ATP2C2-AS1  -     chr16:84459259-84467361 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP2C2-AS1  -     16q24.1   [Description]    (hg19-Feb_2009)
GoldenPathATP2C2-AS1 - 16q24.1 [CytoView hg19]  ATP2C2-AS1 - 16q24.1 [CytoView hg38]
ImmunoBaseENSG00000261286
Mapping of homologs : NCBIATP2C2-AS1 [Mapview hg19]  ATP2C2-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL137668
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP2C2-AS1
Cluster EST : UnigeneHs.610979 [ NCBI ]
CGAP (NCI)Hs.610979
Alternative Splicing GalleryENSG00000261286
Gene ExpressionATP2C2-AS1 [ NCBI-GEO ]   ATP2C2-AS1 [ EBI - ARRAY_EXPRESS ]   ATP2C2-AS1 [ SEEK ]   ATP2C2-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ATP2C2-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105371374
GTEX Portal (Tissue expression)ATP2C2-AS1
Human Protein AtlasENSG00000261286-ATP2C2-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP2C2-AS1
DMDM Disease mutations105371374
Blocks (Seattle)ATP2C2-AS1
Human Protein Atlas [tissue]ENSG00000261286-ATP2C2-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000261286
BioGRIDATP2C2-AS1
STRING (EMBL)ATP2C2-AS1
ZODIACATP2C2-AS1
Ontologies - Pathways
Huge Navigator ATP2C2-AS1 [HugePedia]
snp3D : Map Gene to Disease105371374
BioCentury BCIQATP2C2-AS1
ClinGenATP2C2-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105371374
Clinical trialATP2C2-AS1
Miscellaneous
canSAR (ICR)ATP2C2-AS1 (select the gene name)
DataMed IndexATP2C2-AS1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP2C2-AS1
EVEXATP2C2-AS1
GoPubMedATP2C2-AS1
iHOPATP2C2-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:20:13 CEST 2019
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