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ATP5MD (ATP synthase membrane subunit DAPIT)

Identity

Other aliasDAPIT
HCVFTP2
USMG5
bA792D24.4
HGNC (Hugo) ATP5MD
LocusID (NCBI) 84833
Atlas_Id 80454
Location 10q24.33  [Link to chromosome band 10q24]
Location_base_pair Starts at 103389051 and ends at 103396513 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ATP5MD   30889
Cards
Entrez_Gene (NCBI)ATP5MD  84833  ATP synthase membrane subunit DAPIT
AliasesDAPIT; HCVFTP2; USMG5; bA792D24.4
GeneCards (Weizmann)ATP5MD
Ensembl hg19 (Hinxton)ENSG00000173915 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173915 [Gene_View]  ENSG00000173915 [Sequence]  chr10:103389051-103396513 [Contig_View]  ATP5MD [Vega]
ICGC DataPortalENSG00000173915
TCGA cBioPortalATP5MD
AceView (NCBI)ATP5MD
Genatlas (Paris)ATP5MD
WikiGenes84833
SOURCE (Princeton)ATP5MD
Genetics Home Reference (NIH)ATP5MD
Genomic and cartography
GoldenPath hg38 (UCSC)ATP5MD  -     chr10:103389051-103396513 -  10q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATP5MD  -     10q24.33   [Description]    (hg19-Feb_2009)
GoldenPathATP5MD - 10q24.33 [CytoView hg19]  ATP5MD - 10q24.33 [CytoView hg38]
ImmunoBaseENSG00000173915
Mapping of homologs : NCBIATP5MD [Mapview hg19]  ATP5MD [Mapview hg38]
OMIM615204   
Gene and transcription
Genbank (Entrez)AI479343 AJ272056 AK311888 AL110185 AY740522
RefSeq transcript (Entrez)NM_001206426 NM_001206427 NM_032747
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATP5MD
Cluster EST : UnigeneHs.732499 [ NCBI ]
CGAP (NCI)Hs.732499
Alternative Splicing GalleryENSG00000173915
Gene ExpressionATP5MD [ NCBI-GEO ]   ATP5MD [ EBI - ARRAY_EXPRESS ]   ATP5MD [ SEEK ]   ATP5MD [ MEM ]
Gene Expression Viewer (FireBrowse)ATP5MD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84833
GTEX Portal (Tissue expression)ATP5MD
Human Protein AtlasENSG00000173915-ATP5MD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IX5
Splice isoforms : SwissVarQ96IX5
PhosPhoSitePlusQ96IX5
Domains : Interpro (EBI)DAPIT   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATP5MD
DMDM Disease mutations84833
Blocks (Seattle)ATP5MD
SuperfamilyQ96IX5
Human Protein Atlas [tissue]ENSG00000173915-ATP5MD [tissue]
Peptide AtlasQ96IX5
IPIIPI00063903   
Protein Interaction databases
DIP (DOE-UCLA)Q96IX5
IntAct (EBI)Q96IX5
FunCoupENSG00000173915
BioGRIDATP5MD
STRING (EMBL)ATP5MD
ZODIACATP5MD
Ontologies - Pathways
QuickGOQ96IX5
Ontology : AmiGOmitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  integral component of membrane  
Ontology : EGO-EBImitochondrion  mitochondrial proton-transporting ATP synthase complex  mitochondrial proton-transporting ATP synthase complex  integral component of membrane  
NDEx NetworkATP5MD
Atlas of Cancer Signalling NetworkATP5MD
Wikipedia pathwaysATP5MD
Orthology - Evolution
OrthoDB84833
GeneTree (enSembl)ENSG00000173915
Phylogenetic Trees/Animal Genes : TreeFamATP5MD
HOGENOMQ96IX5
Homologs : HomoloGeneATP5MD
Homology/Alignments : Family Browser (UCSC)ATP5MD
Gene fusions - Rearrangements
Fusion : QuiverATP5MD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATP5MD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATP5MD
dbVarATP5MD
ClinVarATP5MD
1000_GenomesATP5MD 
Exome Variant ServerATP5MD
ExAC (Exome Aggregation Consortium)ENSG00000173915
GNOMAD BrowserENSG00000173915
Varsome BrowserATP5MD
Genetic variants : HAPMAP84833
Genomic Variants (DGV)ATP5MD [DGVbeta]
DECIPHERATP5MD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATP5MD 
Mutations
ICGC Data PortalATP5MD 
TCGA Data PortalATP5MD 
Broad Tumor PortalATP5MD
OASIS PortalATP5MD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDATP5MD
BioMutasearch ATP5MD
DgiDB (Drug Gene Interaction Database)ATP5MD
DoCM (Curated mutations)ATP5MD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATP5MD (select a term)
intoGenATP5MD
Cancer3DATP5MD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615204   
Orphanet
DisGeNETATP5MD
MedgenATP5MD
Genetic Testing Registry ATP5MD
NextProtQ96IX5 [Medical]
TSGene84833
GENETestsATP5MD
Target ValidationATP5MD
Huge Navigator ATP5MD [HugePedia]
snp3D : Map Gene to Disease84833
BioCentury BCIQATP5MD
ClinGenATP5MD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84833
Chemical/Pharm GKB GenePA134968209
Clinical trialATP5MD
Miscellaneous
canSAR (ICR)ATP5MD (select the gene name)
DataMed IndexATP5MD
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATP5MD
EVEXATP5MD
GoPubMedATP5MD
iHOPATP5MD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:20:16 CEST 2019

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