Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ATRIP (ATR interacting protein)

Identity

Alias_symbol (synonym)FLJ12343
MGC20625
MGC21482
MGC26740
Other alias-
HGNC (Hugo) ATRIP
LocusID (NCBI) 84126
Atlas_Id 50207
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48446710 and ends at 48465655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ATRIP   33499
Cards
Entrez_Gene (NCBI)ATRIP  84126  ATR interacting protein
Aliases
GeneCards (Weizmann)ATRIP
Ensembl hg19 (Hinxton)ENSG00000164053 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164053 [Gene_View]  ENSG00000164053 [Sequence]  chr3:48446710-48465655 [Contig_View]  ATRIP [Vega]
ICGC DataPortalENSG00000164053
TCGA cBioPortalATRIP
AceView (NCBI)ATRIP
Genatlas (Paris)ATRIP
WikiGenes84126
SOURCE (Princeton)ATRIP
Genetics Home Reference (NIH)ATRIP
Genomic and cartography
GoldenPath hg38 (UCSC)ATRIP  -     chr3:48446710-48465655 +  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ATRIP  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathATRIP - 3p21.31 [CytoView hg19]  ATRIP - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000164053
Mapping of homologs : NCBIATRIP [Mapview hg19]  ATRIP [Mapview hg38]
OMIM606605   
Gene and transcription
Genbank (Entrez)AF451323 AK022405 AK291568 AK291829 AK300548
RefSeq transcript (Entrez)NM_001271022 NM_001271023 NM_032166 NM_130384
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ATRIP
Cluster EST : UnigeneHs.694840 [ NCBI ]
CGAP (NCI)Hs.694840
Alternative Splicing GalleryENSG00000164053
Gene ExpressionATRIP [ NCBI-GEO ]   ATRIP [ EBI - ARRAY_EXPRESS ]   ATRIP [ SEEK ]   ATRIP [ MEM ]
Gene Expression Viewer (FireBrowse)ATRIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84126
GTEX Portal (Tissue expression)ATRIP
Human Protein AtlasENSG00000164053-ATRIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXE1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXE1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXE1
Splice isoforms : SwissVarQ8WXE1
PhosPhoSitePlusQ8WXE1
Domains : Interpro (EBI)ATRIP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ATRIP
DMDM Disease mutations84126
Blocks (Seattle)ATRIP
PDB (RSDB)4IGK    4NB3    5YZ0   
PDB Europe4IGK    4NB3    5YZ0   
PDB (PDBSum)4IGK    4NB3    5YZ0   
PDB (IMB)4IGK    4NB3    5YZ0   
Structural Biology KnowledgeBase4IGK    4NB3    5YZ0   
SCOP (Structural Classification of Proteins)4IGK    4NB3    5YZ0   
CATH (Classification of proteins structures)4IGK    4NB3    5YZ0   
SuperfamilyQ8WXE1
Human Protein Atlas [tissue]ENSG00000164053-ATRIP [tissue]
Peptide AtlasQ8WXE1
IPIIPI00103517   IPI00102918   IPI00413576   IPI00926379   IPI00413577   IPI00926094   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXE1
IntAct (EBI)Q8WXE1
FunCoupENSG00000164053
BioGRIDATRIP
STRING (EMBL)ATRIP
ZODIACATRIP
Ontologies - Pathways
QuickGOQ8WXE1
Ontology : AmiGODNA damage checkpoint  DNA damage checkpoint  protein binding  nucleus  nucleus  nucleoplasm  DNA replication  DNA repair  interstrand cross-link repair  K63-linked polyubiquitin modification-dependent protein binding  regulation of signal transduction by p53 class mediator  
Ontology : EGO-EBIDNA damage checkpoint  DNA damage checkpoint  protein binding  nucleus  nucleus  nucleoplasm  DNA replication  DNA repair  interstrand cross-link repair  K63-linked polyubiquitin modification-dependent protein binding  regulation of signal transduction by p53 class mediator  
Pathways : KEGGFanconi anemia pathway   
NDEx NetworkATRIP
Atlas of Cancer Signalling NetworkATRIP
Wikipedia pathwaysATRIP
Orthology - Evolution
OrthoDB84126
GeneTree (enSembl)ENSG00000164053
Phylogenetic Trees/Animal Genes : TreeFamATRIP
HOGENOMQ8WXE1
Homologs : HomoloGeneATRIP
Homology/Alignments : Family Browser (UCSC)ATRIP
Gene fusions - Rearrangements
Fusion : QuiverATRIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerATRIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ATRIP
dbVarATRIP
ClinVarATRIP
1000_GenomesATRIP 
Exome Variant ServerATRIP
ExAC (Exome Aggregation Consortium)ENSG00000164053
GNOMAD BrowserENSG00000164053
Varsome BrowserATRIP
Genetic variants : HAPMAP84126
Genomic Variants (DGV)ATRIP [DGVbeta]
DECIPHERATRIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisATRIP 
Mutations
ICGC Data PortalATRIP 
TCGA Data PortalATRIP 
Broad Tumor PortalATRIP
OASIS PortalATRIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICATRIP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DATRIP
Mutations and Diseases : HGMDATRIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ATRIP
DgiDB (Drug Gene Interaction Database)ATRIP
DoCM (Curated mutations)ATRIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ATRIP (select a term)
intoGenATRIP
Cancer3DATRIP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606605   
Orphanet954   
DisGeNETATRIP
MedgenATRIP
Genetic Testing Registry ATRIP
NextProtQ8WXE1 [Medical]
TSGene84126
GENETestsATRIP
Target ValidationATRIP
Huge Navigator ATRIP [HugePedia]
snp3D : Map Gene to Disease84126
BioCentury BCIQATRIP
ClinGenATRIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84126
Chemical/Pharm GKB GenePA162377290
Clinical trialATRIP
Miscellaneous
canSAR (ICR)ATRIP (select the gene name)
DataMed IndexATRIP
Probes
Litterature
PubMed75 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineATRIP
EVEXATRIP
GoPubMedATRIP
iHOPATRIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:33:39 CET 2019
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