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BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB)

Identity

Alias (NCBI)DFNB112
HSA238520
TAF3B1
TFC5
TFIIIB''
TFIIIB150
TFIIIB90
TFNR
HGNC (Hugo) BDP1
HGNC Alias symbTFIIIB150
TFC5
TFIIIB90
KIAA1689
HSA238520
KIAA1241
HGNC Previous nameTFNR
 TAF3B1
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1
LocusID (NCBI) 55814
Atlas_Id 60731
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 71455615 and ends at 71567822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BDP1 (5q13.2) / BDP1 (5q13.2)BDP1 (5q13.2) / CWC27 (5q12.3)BDP1 (5q13.2) / KDM5A (12p13.33)
USP8 (15q21.2) / BDP1 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(5;6)(q13;q23) MYB/BDP1
t(5;6)(q13;q23) MYB/BDP1

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(5;5)(q12;q13) BDP1/CWC27
t(5;15)(q13;q21) USP8/BDP1

External links

Nomenclature
HGNC (Hugo)BDP1   13652
Cards
Entrez_Gene (NCBI)BDP1    B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
AliasesDFNB112; HSA238520; TAF3B1; TFC5; 
TFIIIB''; TFIIIB150; TFIIIB90; TFNR
GeneCards (Weizmann)BDP1
Ensembl hg19 (Hinxton)ENSG00000145734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145734 [Gene_View]  ENSG00000145734 [Sequence]  chr5:71455615-71567822 [Contig_View]  BDP1 [Vega]
ICGC DataPortalENSG00000145734
TCGA cBioPortalBDP1
AceView (NCBI)BDP1
Genatlas (Paris)BDP1
SOURCE (Princeton)BDP1
Genetics Home Reference (NIH)BDP1
Genomic and cartography
GoldenPath hg38 (UCSC)BDP1  -     chr5:71455615-71567822 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BDP1  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathBDP1 - 5q13.2 [CytoView hg19]  BDP1 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000145734
genome Data Viewer NCBIBDP1 [Mapview hg19]  
OMIM607012   618257   
Gene and transcription
Genbank (Entrez)AB033067 AB051476 AF176695 AF298151 AF298152
RefSeq transcript (Entrez)NM_018429
RefSeq genomic (Entrez)NC_000005 NG_047017 NT_187651 NW_003315917
Consensus coding sequences : CCDS (NCBI)BDP1
Alternative Splicing GalleryENSG00000145734
Gene ExpressionBDP1 [ NCBI-GEO ]   BDP1 [ EBI - ARRAY_EXPRESS ]   BDP1 [ SEEK ]   BDP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BDP1 [ Firebrowse - Broad ]
GenevisibleExpression of BDP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55814
GTEX Portal (Tissue expression)BDP1
Human Protein AtlasENSG00000145734-BDP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6H8Y1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6H8Y1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6H8Y1
Splice isoforms : SwissVarA6H8Y1
PhosPhoSitePlusA6H8Y1
Domains : Interpro (EBI)Homeobox-like_sf    SANT/Myb    TFIIIB_B''_Myb   
Domain families : Pfam (Sanger)Myb_DNA-bind_7 (PF15963)   
Domain families : Pfam (NCBI)pfam15963   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)BDP1
Blocks (Seattle)BDP1
PDB (RSDB)5N9G   
PDB Europe5N9G   
PDB (PDBSum)5N9G   
PDB (IMB)5N9G   
Structural Biology KnowledgeBase5N9G   
SCOP (Structural Classification of Proteins)5N9G   
CATH (Classification of proteins structures)5N9G   
SuperfamilyA6H8Y1
Human Protein Atlas [tissue]ENSG00000145734-BDP1 [tissue]
Peptide AtlasA6H8Y1
HPRD06114
IPIIPI00760877   IPI00893915   IPI00894056   IPI00872938   IPI00893280   IPI00893272   IPI00470932   IPI00893156   IPI00941794   IPI01013853   
Protein Interaction databases
DIP (DOE-UCLA)A6H8Y1
IntAct (EBI)A6H8Y1
BioGRIDBDP1
STRING (EMBL)BDP1
ZODIACBDP1
Ontologies - Pathways
QuickGOA6H8Y1
Ontology : AmiGOtranscription factor TFIIIB complex  TFIIIC-class transcription factor complex binding  DNA binding  nucleoplasm  nucleoplasm  RNA polymerase III preinitiation complex assembly  
Ontology : EGO-EBItranscription factor TFIIIB complex  TFIIIC-class transcription factor complex binding  DNA binding  nucleoplasm  nucleoplasm  RNA polymerase III preinitiation complex assembly  
NDEx NetworkBDP1
Atlas of Cancer Signalling NetworkBDP1
Wikipedia pathwaysBDP1
Orthology - Evolution
OrthoDB55814
GeneTree (enSembl)ENSG00000145734
Phylogenetic Trees/Animal Genes : TreeFamBDP1
HOGENOMA6H8Y1
Homologs : HomoloGeneBDP1
Homology/Alignments : Family Browser (UCSC)BDP1
Gene fusions - Rearrangements
Fusion : QuiverBDP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBDP1 [hg38]
dbVarBDP1
ClinVarBDP1
MonarchBDP1
1000_GenomesBDP1 
Exome Variant ServerBDP1
GNOMAD BrowserENSG00000145734
Varsome BrowserBDP1
Genomic Variants (DGV)BDP1 [DGVbeta]
DECIPHERBDP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBDP1 
Mutations
ICGC Data PortalBDP1 
TCGA Data PortalBDP1 
Broad Tumor PortalBDP1
OASIS PortalBDP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBDP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBDP1
Mutations and Diseases : HGMDBDP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BDP1
DgiDB (Drug Gene Interaction Database)BDP1
DoCM (Curated mutations)BDP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BDP1 (select a term)
intoGenBDP1
Cancer3DBDP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607012    618257   
Orphanet
DisGeNETBDP1
MedgenBDP1
Genetic Testing Registry BDP1
NextProtA6H8Y1 [Medical]
GENETestsBDP1
Target ValidationBDP1
Huge Navigator BDP1 [HugePedia]
ClinGenBDP1
Clinical trials, drugs, therapy
MyCancerGenomeBDP1
Protein Interactions : CTD
Pharm GKB GenePA25336
Clinical trialBDP1
Miscellaneous
canSAR (ICR)BDP1 (select the gene name)
HarmonizomeBDP1
DataMed IndexBDP1
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBDP1
EVEXBDP1
GoPubMedBDP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:46:58 CET 2020
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