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BLZF1 (basic leucine zipper nuclear factor 1)

Identity

Other namesGOLGIN-45
JEM-1
JEM-1s
JEM1
HGNC (Hugo) BLZF1
LocusID (NCBI) 8548
Atlas_Id 806
Location 1q24.2
Location_base_pair Starts at 169337194 and ends at 169365780 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BLZF1 (1q24.2) / MPC2 (1q24.2)BLZF1 1q24.2 BRP44

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BLZF1   1065
Cards
Entrez_Gene (NCBI)BLZF1  8548  basic leucine zipper nuclear factor 1
AliasesGOLGIN-45; JEM-1; JEM-1s; JEM1
GeneCards (Weizmann)BLZF1
Ensembl hg19 (Hinxton)ENSG00000117475 [Gene_View]  chr1:169337194-169365780 [Contig_View]  BLZF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000117475 [Gene_View]  chr1:169337194-169365780 [Contig_View]  BLZF1 [Vega]
ICGC DataPortalENSG00000117475
TCGA cBioPortalBLZF1
AceView (NCBI)BLZF1
Genatlas (Paris)BLZF1
WikiGenes8548
SOURCE (Princeton)BLZF1
Genomic and cartography
GoldenPath hg19 (UCSC)BLZF1  -     chr1:169337194-169365780 +  1q24.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BLZF1  -     1q24.2   [Description]    (hg38-Dec_2013)
EnsemblBLZF1 - 1q24.2 [CytoView hg19]  BLZF1 - 1q24.2 [CytoView hg38]
Mapping of homologs : NCBIBLZF1 [Mapview hg19]  BLZF1 [Mapview hg38]
OMIM608692   
Gene and transcription
Genbank (Entrez)AF288161 AK055883 AK223533 AK291725 AK307151
RefSeq transcript (Entrez)NM_001320972 NM_001320973 NM_003666
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_004487 NW_004929293
Consensus coding sequences : CCDS (NCBI)BLZF1
Cluster EST : UnigeneHs.130746 [ NCBI ]
CGAP (NCI)Hs.130746
Alternative Splicing GalleryENSG00000117475
Gene ExpressionBLZF1 [ NCBI-GEO ]   BLZF1 [ EBI - ARRAY_EXPRESS ]   BLZF1 [ SEEK ]   BLZF1 [ MEM ]
Gene Expression Viewer (FireBrowse)BLZF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8548
GTEX Portal (Tissue expression)BLZF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2G9 (Uniprot)
NextProtQ9H2G9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2G9
Splice isoforms : SwissVarQ9H2G9 (Swissvar)
PhosPhoSitePlusQ9H2G9
Domains : Interpro (EBI)Golgin-45    Hsk3-like   
Domain families : Pfam (Sanger)DASH_Hsk3 (PF08227)   
Domain families : Pfam (NCBI)pfam08227   
DMDM Disease mutations8548
Blocks (Seattle)BLZF1
SuperfamilyQ9H2G9
Human Protein AtlasENSG00000117475
Peptide AtlasQ9H2G9
HPRD16367
IPIIPI00455985   IPI00386502   IPI00647811   IPI00555943   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2G9
IntAct (EBI)Q9H2G9
FunCoupENSG00000117475
BioGRIDBLZF1
STRING (EMBL)BLZF1
ZODIACBLZF1
Ontologies - Pathways
QuickGOQ9H2G9
Ontology : AmiGOGolgi membrane  Golgi membrane  regulation of cell growth  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  Golgi lumen  regulation of transcription from RNA polymerase II promoter  Golgi organization  cell proliferation  enzyme binding  ubiquitin protein ligase binding  Golgi to plasma membrane protein transport  
Ontology : EGO-EBIGolgi membrane  Golgi membrane  regulation of cell growth  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  Golgi lumen  regulation of transcription from RNA polymerase II promoter  Golgi organization  cell proliferation  enzyme binding  ubiquitin protein ligase binding  Golgi to plasma membrane protein transport  
NDEx Network
Atlas of Cancer Signalling NetworkBLZF1
Wikipedia pathwaysBLZF1
Orthology - Evolution
OrthoDB8548
GeneTree (enSembl)ENSG00000117475
Phylogenetic Trees/Animal Genes : TreeFamBLZF1
Homologs : HomoloGeneBLZF1
Homology/Alignments : Family Browser (UCSC)BLZF1
Gene fusions - Rearrangements
Fusion: TCGABLZF1 1q24.2 BRP44 BRCA
Polymorphisms : SNP, variants
NCBI Variation ViewerBLZF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BLZF1
dbVarBLZF1
ClinVarBLZF1
1000_GenomesBLZF1 
Exome Variant ServerBLZF1
ExAC (Exome Aggregation Consortium)BLZF1 (select the gene name)
Genetic variants : HAPMAP8548
Genomic Variants (DGV)BLZF1 [DGVbeta]
Mutations
ICGC Data PortalBLZF1 
TCGA Data PortalBLZF1 
Broad Tumor PortalBLZF1
OASIS PortalBLZF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBLZF1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BLZF1
DgiDB (Drug Gene Interaction Database)BLZF1
DoCM (Curated mutations)BLZF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BLZF1 (select a term)
intoGenBLZF1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:169337194-169365780  ENSG00000117475
CONAN: Copy Number AnalysisBLZF1 
Mutations and Diseases : HGMDBLZF1
OMIM608692   
MedgenBLZF1
Genetic Testing Registry BLZF1
NextProtQ9H2G9 [Medical]
TSGene8548
GENETestsBLZF1
Huge Navigator BLZF1 [HugePedia]
snp3D : Map Gene to Disease8548
BioCentury BCIQBLZF1
ClinGenBLZF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8548
Chemical/Pharm GKB GenePA25375
Clinical trialBLZF1
Miscellaneous
canSAR (ICR)BLZF1 (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBLZF1
EVEXBLZF1
GoPubMedBLZF1
iHOPBLZF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:55:28 CEST 2016

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