Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C11orf97 (chromosome 11 open reading frame 97)

Identity

Alias_namesLINC01171
long intergenic non-protein coding RNA 1171
Other alias
HGNC (Hugo) C11orf97
LocusID (NCBI) 643037
Atlas_Id 60906
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 94512529 and ends at 94532123 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C11orf97   49544
Cards
Entrez_Gene (NCBI)C11orf97  643037  chromosome 11 open reading frame 97
AliasesLINC01171
GeneCards (Weizmann)C11orf97
Ensembl hg19 (Hinxton)ENSG00000257057 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257057 [Gene_View]  ENSG00000257057 [Sequence]  chr11:94512529-94532123 [Contig_View]  C11orf97 [Vega]
ICGC DataPortalENSG00000257057
TCGA cBioPortalC11orf97
AceView (NCBI)C11orf97
Genatlas (Paris)C11orf97
WikiGenes643037
SOURCE (Princeton)C11orf97
Genetics Home Reference (NIH)C11orf97
Genomic and cartography
GoldenPath hg38 (UCSC)C11orf97  -     chr11:94512529-94532123 +  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C11orf97  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathC11orf97 - 11q21 [CytoView hg19]  C11orf97 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000257057
Mapping of homologs : NCBIC11orf97 [Mapview hg19]  C11orf97 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001190462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C11orf97
Alternative Splicing GalleryENSG00000257057
Gene ExpressionC11orf97 [ NCBI-GEO ]   C11orf97 [ EBI - ARRAY_EXPRESS ]   C11orf97 [ SEEK ]   C11orf97 [ MEM ]
Gene Expression Viewer (FireBrowse)C11orf97 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)643037
GTEX Portal (Tissue expression)C11orf97
Human Protein AtlasENSG00000257057-C11orf97 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C11orf97
DMDM Disease mutations643037
Blocks (Seattle)C11orf97
Human Protein Atlas [tissue]ENSG00000257057-C11orf97 [tissue]
IPIIPI00977097   
Protein Interaction databases
FunCoupENSG00000257057
BioGRIDC11orf97
STRING (EMBL)C11orf97
ZODIACC11orf97
Ontologies - Pathways
Huge Navigator C11orf97 [HugePedia]
snp3D : Map Gene to Disease643037
BioCentury BCIQC11orf97
ClinGenC11orf97
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643037
Clinical trialC11orf97
Miscellaneous
canSAR (ICR)C11orf97 (select the gene name)
DataMed IndexC11orf97
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC11orf97
EVEXC11orf97
GoPubMedC11orf97
iHOPC11orf97
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:21:09 CEST 2019
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