Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C15orf65 (chromosome 15 open reading frame 65)

Identity

Alias (NCBI)-
HGNC (Hugo) C15orf65
HGNC Alias symbFLJ27352
LocusID (NCBI) 145788
Atlas_Id 55057
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 55408495 and ends at 55418796 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C15orf65 (15q21.3) / CIITA (16p13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(15;16)(q21;p13) CIITA/C15orf65

External links

Nomenclature
HGNC (Hugo)C15orf65   44654
Cards
Entrez_Gene (NCBI)C15orf65    chromosome 15 open reading frame 65
Aliases
GeneCards (Weizmann)C15orf65
Ensembl hg19 (Hinxton)ENSG00000261652 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261652 [Gene_View]  ENSG00000261652 [Sequence]  chr15:55408495-55418796 [Contig_View]  C15orf65 [Vega]
ICGC DataPortalENSG00000261652
TCGA cBioPortalC15orf65
AceView (NCBI)C15orf65
Genatlas (Paris)C15orf65
SOURCE (Princeton)C15orf65
Genetics Home Reference (NIH)C15orf65
Genomic and cartography
GoldenPath hg38 (UCSC)C15orf65  -     chr15:55408495-55418796 +  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C15orf65  -     15q21.3   [Description]    (hg19-Feb_2009)
GoldenPathC15orf65 - 15q21.3 [CytoView hg19]  C15orf65 - 15q21.3 [CytoView hg38]
ImmunoBaseENSG00000261652
genome Data Viewer NCBIC15orf65 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK130862 AV735277 BX648577
RefSeq transcript (Entrez)NM_001198784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C15orf65
Alternative Splicing GalleryENSG00000261652
Gene ExpressionC15orf65 [ NCBI-GEO ]   C15orf65 [ EBI - ARRAY_EXPRESS ]   C15orf65 [ SEEK ]   C15orf65 [ MEM ]
Gene Expression Viewer (FireBrowse)C15orf65 [ Firebrowse - Broad ]
GenevisibleExpression of C15orf65 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)145788
GTEX Portal (Tissue expression)C15orf65
Human Protein AtlasENSG00000261652-C15orf65 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtH3BRN8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtH3BRN8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProH3BRN8
Splice isoforms : SwissVarH3BRN8
PhosPhoSitePlusH3BRN8
Domains : Interpro (EBI)UPF0691   
Domain families : Pfam (Sanger)DUF4490 (PF14892)   
Domain families : Pfam (NCBI)pfam14892   
Conserved Domain (NCBI)C15orf65
Blocks (Seattle)C15orf65
SuperfamilyH3BRN8
Human Protein Atlas [tissue]ENSG00000261652-C15orf65 [tissue]
Peptide AtlasH3BRN8
IPIIPI00748457   
Protein Interaction databases
DIP (DOE-UCLA)H3BRN8
IntAct (EBI)H3BRN8
BioGRIDC15orf65
STRING (EMBL)C15orf65
ZODIACC15orf65
Ontologies - Pathways
QuickGOH3BRN8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC15orf65
Atlas of Cancer Signalling NetworkC15orf65
Wikipedia pathwaysC15orf65
Orthology - Evolution
OrthoDB145788
GeneTree (enSembl)ENSG00000261652
Phylogenetic Trees/Animal Genes : TreeFamC15orf65
HOGENOMH3BRN8
Homologs : HomoloGeneC15orf65
Homology/Alignments : Family Browser (UCSC)C15orf65
Gene fusions - Rearrangements
Fusion : QuiverC15orf65
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC15orf65 [hg38]
dbVarC15orf65
ClinVarC15orf65
MonarchC15orf65
1000_GenomesC15orf65 
Exome Variant ServerC15orf65
GNOMAD BrowserENSG00000261652
Varsome BrowserC15orf65
Genomic Variants (DGV)C15orf65 [DGVbeta]
DECIPHERC15orf65 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC15orf65 
Mutations
ICGC Data PortalC15orf65 
TCGA Data PortalC15orf65 
Broad Tumor PortalC15orf65
OASIS PortalC15orf65 [ Somatic mutations - Copy number]
Cancer Gene: CensusC15orf65 
Somatic Mutations in Cancer : COSMICC15orf65  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC15orf65
Mutations and Diseases : HGMDC15orf65
BioMutasearch C15orf65
DgiDB (Drug Gene Interaction Database)C15orf65
DoCM (Curated mutations)C15orf65 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C15orf65 (select a term)
intoGenC15orf65
Cancer3DC15orf65(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC15orf65
MedgenC15orf65
Genetic Testing Registry C15orf65
NextProtH3BRN8 [Medical]
GENETestsC15orf65
Target ValidationC15orf65
Huge Navigator C15orf65 [HugePedia]
ClinGenC15orf65
Clinical trials, drugs, therapy
MyCancerGenomeC15orf65
Protein Interactions : CTD
Pharm GKB GenePA166123672
PharosH3BRN8
Clinical trialC15orf65
Miscellaneous
canSAR (ICR)C15orf65 (select the gene name)
HarmonizomeC15orf65
DataMed IndexC15orf65
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXC15orf65
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:13:14 CET 2021
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