Atlas of Genetics and Cytogenetics in Oncology and Haematology

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C16orf74 (chromosome 16 open reading frame 74)

Identity

Alias_symbol (synonym)MGC17624
Other alias-
HGNC (Hugo) C16orf74
LocusID (NCBI) 404550
Atlas_Id 52380
Location 16q24.1  [Link to chromosome band 16q24]
Location_base_pair Starts at 85707518 and ends at 85751083 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C16orf74 (16q24.1) / ICMT (1p36.31)C16orf74 (16q24.1) / SLPI (20q13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)C16orf74   23362
Cards
Entrez_Gene (NCBI)C16orf74  404550  chromosome 16 open reading frame 74
Aliases
GeneCards (Weizmann)C16orf74
Ensembl hg19 (Hinxton)ENSG00000154102 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154102 [Gene_View]  ENSG00000154102 [Sequence]  chr16:85707518-85751083 [Contig_View]  C16orf74 [Vega]
ICGC DataPortalENSG00000154102
TCGA cBioPortalC16orf74
AceView (NCBI)C16orf74
Genatlas (Paris)C16orf74
WikiGenes404550
SOURCE (Princeton)C16orf74
Genetics Home Reference (NIH)C16orf74
Genomic and cartography
GoldenPath hg38 (UCSC)C16orf74  -     chr16:85707518-85751083 -  16q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C16orf74  -     16q24.1   [Description]    (hg19-Feb_2009)
GoldenPathC16orf74 - 16q24.1 [CytoView hg19]  C16orf74 - 16q24.1 [CytoView hg38]
ImmunoBaseENSG00000154102
Mapping of homologs : NCBIC16orf74 [Mapview hg19]  C16orf74 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB115764 AB115765 AB115766 AW072412 BC009078
RefSeq transcript (Entrez)NM_206967
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C16orf74
Cluster EST : UnigeneHs.461655 [ NCBI ]
CGAP (NCI)Hs.461655
Alternative Splicing GalleryENSG00000154102
Gene ExpressionC16orf74 [ NCBI-GEO ]   C16orf74 [ EBI - ARRAY_EXPRESS ]   C16orf74 [ SEEK ]   C16orf74 [ MEM ]
Gene Expression Viewer (FireBrowse)C16orf74 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)404550
GTEX Portal (Tissue expression)C16orf74
Human Protein AtlasENSG00000154102-C16orf74 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GX8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GX8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GX8
Splice isoforms : SwissVarQ96GX8
PhosPhoSitePlusQ96GX8
Domains : Interpro (EBI)DUF4597   
Domain families : Pfam (Sanger)DUF4597 (PF15366)   
Domain families : Pfam (NCBI)pfam15366   
Conserved Domain (NCBI)C16orf74
DMDM Disease mutations404550
Blocks (Seattle)C16orf74
SuperfamilyQ96GX8
Human Protein Atlas [tissue]ENSG00000154102-C16orf74 [tissue]
Peptide AtlasQ96GX8
HPRD14460
IPIIPI00418325   
Protein Interaction databases
DIP (DOE-UCLA)Q96GX8
IntAct (EBI)Q96GX8
FunCoupENSG00000154102
BioGRIDC16orf74
STRING (EMBL)C16orf74
ZODIACC16orf74
Ontologies - Pathways
QuickGOQ96GX8
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkC16orf74
Atlas of Cancer Signalling NetworkC16orf74
Wikipedia pathwaysC16orf74
Orthology - Evolution
OrthoDB404550
GeneTree (enSembl)ENSG00000154102
Phylogenetic Trees/Animal Genes : TreeFamC16orf74
HOGENOMQ96GX8
Homologs : HomoloGeneC16orf74
Homology/Alignments : Family Browser (UCSC)C16orf74
Gene fusions - Rearrangements
Fusion : QuiverC16orf74
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC16orf74 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C16orf74
dbVarC16orf74
ClinVarC16orf74
1000_GenomesC16orf74 
Exome Variant ServerC16orf74
ExAC (Exome Aggregation Consortium)ENSG00000154102
GNOMAD BrowserENSG00000154102
Varsome BrowserC16orf74
Genetic variants : HAPMAP404550
Genomic Variants (DGV)C16orf74 [DGVbeta]
DECIPHERC16orf74 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC16orf74 
Mutations
ICGC Data PortalC16orf74 
TCGA Data PortalC16orf74 
Broad Tumor PortalC16orf74
OASIS PortalC16orf74 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC16orf74  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC16orf74
Mutations and Diseases : HGMDC16orf74
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C16orf74
DgiDB (Drug Gene Interaction Database)C16orf74
DoCM (Curated mutations)C16orf74 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C16orf74 (select a term)
intoGenC16orf74
Cancer3DC16orf74(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC16orf74
MedgenC16orf74
Genetic Testing Registry C16orf74
NextProtQ96GX8 [Medical]
TSGene404550
GENETestsC16orf74
Target ValidationC16orf74
Huge Navigator C16orf74 [HugePedia]
snp3D : Map Gene to Disease404550
BioCentury BCIQC16orf74
ClinGenC16orf74
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD404550
Chemical/Pharm GKB GenePA145149623
Clinical trialC16orf74
Miscellaneous
canSAR (ICR)C16orf74 (select the gene name)
DataMed IndexC16orf74
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC16orf74
EVEXC16orf74
GoPubMedC16orf74
iHOPC16orf74
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:34:43 CET 2019
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