Atlas of Genetics and Cytogenetics in Oncology and Haematology


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C17orf99 (chromosome 17 open reading frame 99)

Identity

Alias (NCBI)IL-40
UNQ464
HGNC (Hugo) C17orf99
HGNC Alias symbGLPG464
UNQ464
LocusID (NCBI) 100141515
Atlas_Id 61008
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 78146353 and ends at 78166283 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)C17orf99   34490
Cards
Entrez_Gene (NCBI)C17orf99  100141515  chromosome 17 open reading frame 99
AliasesIL-40; UNQ464
GeneCards (Weizmann)C17orf99
Ensembl hg19 (Hinxton)ENSG00000187997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187997 [Gene_View]  ENSG00000187997 [Sequence]  chr17:78146353-78166283 [Contig_View]  C17orf99 [Vega]
ICGC DataPortalENSG00000187997
TCGA cBioPortalC17orf99
AceView (NCBI)C17orf99
Genatlas (Paris)C17orf99
WikiGenes100141515
SOURCE (Princeton)C17orf99
Genetics Home Reference (NIH)C17orf99
Genomic and cartography
GoldenPath hg38 (UCSC)C17orf99  -     chr17:78146353-78166283 +  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C17orf99  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathC17orf99 - 17q25.3 [CytoView hg19]  C17orf99 - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000187997
genome Data Viewer NCBIC17orf99 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK303128 AY358510
RefSeq transcript (Entrez)NM_001163075
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C17orf99
Alternative Splicing GalleryENSG00000187997
Gene ExpressionC17orf99 [ NCBI-GEO ]   C17orf99 [ EBI - ARRAY_EXPRESS ]   C17orf99 [ SEEK ]   C17orf99 [ MEM ]
Gene Expression Viewer (FireBrowse)C17orf99 [ Firebrowse - Broad ]
GenevisibleExpression of C17orf99 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100141515
GTEX Portal (Tissue expression)C17orf99
Human Protein AtlasENSG00000187997-C17orf99 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UX52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UX52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UX52
Splice isoforms : SwissVarQ6UX52
PhosPhoSitePlusQ6UX52
Domains : Interpro (EBI)Ig_C17orf99   
Domain families : Pfam (Sanger)Ig_C17orf99 (PF17736)   
Domain families : Pfam (NCBI)pfam17736   
Conserved Domain (NCBI)C17orf99
DMDM Disease mutations100141515
Blocks (Seattle)C17orf99
SuperfamilyQ6UX52
Human Protein Atlas [tissue]ENSG00000187997-C17orf99 [tissue]
Peptide AtlasQ6UX52
IPIIPI00419665   IPI00909806   
Protein Interaction databases
DIP (DOE-UCLA)Q6UX52
IntAct (EBI)Q6UX52
FunCoupENSG00000187997
BioGRIDC17orf99
STRING (EMBL)C17orf99
ZODIACC17orf99
Ontologies - Pathways
QuickGOQ6UX52
Ontology : AmiGOadaptive immune response  mature B cell differentiation involved in immune response  cytokine activity  extracellular space  signal transduction  positive regulation of immunoglobulin production in mucosal tissue  
Ontology : EGO-EBIadaptive immune response  mature B cell differentiation involved in immune response  cytokine activity  extracellular space  signal transduction  positive regulation of immunoglobulin production in mucosal tissue  
NDEx NetworkC17orf99
Atlas of Cancer Signalling NetworkC17orf99
Wikipedia pathwaysC17orf99
Orthology - Evolution
OrthoDB100141515
GeneTree (enSembl)ENSG00000187997
Phylogenetic Trees/Animal Genes : TreeFamC17orf99
HOGENOMQ6UX52
Homologs : HomoloGeneC17orf99
Homology/Alignments : Family Browser (UCSC)C17orf99
Gene fusions - Rearrangements
Fusion : QuiverC17orf99
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC17orf99 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C17orf99
dbVarC17orf99
ClinVarC17orf99
1000_GenomesC17orf99 
Exome Variant ServerC17orf99
GNOMAD BrowserENSG00000187997
Varsome BrowserC17orf99
Genetic variants : HAPMAP100141515
Genomic Variants (DGV)C17orf99 [DGVbeta]
DECIPHERC17orf99 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC17orf99 
Mutations
ICGC Data PortalC17orf99 
TCGA Data PortalC17orf99 
Broad Tumor PortalC17orf99
OASIS PortalC17orf99 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICC17orf99  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DC17orf99
Mutations and Diseases : HGMDC17orf99
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch C17orf99
DgiDB (Drug Gene Interaction Database)C17orf99
DoCM (Curated mutations)C17orf99 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C17orf99 (select a term)
intoGenC17orf99
Cancer3DC17orf99(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC17orf99
MedgenC17orf99
Genetic Testing Registry C17orf99
NextProtQ6UX52 [Medical]
TSGene100141515
GENETestsC17orf99
Target ValidationC17orf99
Huge Navigator C17orf99 [HugePedia]
snp3D : Map Gene to Disease100141515
BioCentury BCIQC17orf99
ClinGenC17orf99
Clinical trials, drugs, therapy
Protein Interactions : CTD100141515
Pharm GKB GenePA162378601
Clinical trialC17orf99
Miscellaneous
canSAR (ICR)C17orf99 (select the gene name)
HarmonizomeC17orf99
DataMed IndexC17orf99
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC17orf99
EVEXC17orf99
GoPubMedC17orf99
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:49:25 CEST 2020

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