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C3orf86 (chromosome 3 open reading frame 86)

Identity

Other aliasLINC00694
HGNC (Hugo) C3orf86
LocusID (NCBI) 102724231
Atlas_Id 80536
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44421132 and ends at 44424025 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C3orf86   44570
Cards
Entrez_Gene (NCBI)C3orf86  102724231  chromosome 3 open reading frame 86
AliasesLINC00694
GeneCards (Weizmann)C3orf86
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr3:44421132-44424025 [Contig_View]  C3orf86 [Vega]
TCGA cBioPortalC3orf86
AceView (NCBI)C3orf86
Genatlas (Paris)C3orf86
WikiGenes102724231
SOURCE (Princeton)C3orf86
Genetics Home Reference (NIH)C3orf86
Genomic and cartography
GoldenPath hg38 (UCSC)C3orf86  -     chr3:44421132-44424025 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C3orf86  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathC3orf86 - 3p21.31 [CytoView hg19]  C3orf86 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIC3orf86 [Mapview hg19]  C3orf86 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA448155 BX377745 HY025704
RefSeq transcript (Entrez)NM_001351479 NM_001351480
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C3orf86
Cluster EST : UnigeneHs.131918 [ NCBI ]
CGAP (NCI)Hs.131918
Gene ExpressionC3orf86 [ NCBI-GEO ]   C3orf86 [ EBI - ARRAY_EXPRESS ]   C3orf86 [ SEEK ]   C3orf86 [ MEM ]
Gene Expression Viewer (FireBrowse)C3orf86 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)102724231
GTEX Portal (Tissue expression)C3orf86
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DN24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DN24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DN24
Splice isoforms : SwissVarP0DN24
PhosPhoSitePlusP0DN24
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C3orf86
DMDM Disease mutations102724231
Blocks (Seattle)C3orf86
SuperfamilyP0DN24
Peptide AtlasP0DN24
Protein Interaction databases
DIP (DOE-UCLA)P0DN24
IntAct (EBI)P0DN24
BioGRIDC3orf86
STRING (EMBL)C3orf86
ZODIACC3orf86
Ontologies - Pathways
QuickGOP0DN24
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkC3orf86
Atlas of Cancer Signalling NetworkC3orf86
Wikipedia pathwaysC3orf86
Orthology - Evolution
OrthoDB102724231
Phylogenetic Trees/Animal Genes : TreeFamC3orf86
HOGENOMP0DN24
Homologs : HomoloGeneC3orf86
Homology/Alignments : Family Browser (UCSC)C3orf86
Gene fusions - Rearrangements
Fusion : QuiverC3orf86
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerC3orf86 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)C3orf86
dbVarC3orf86
ClinVarC3orf86
1000_GenomesC3orf86 
Exome Variant ServerC3orf86
Varsome BrowserC3orf86
Genetic variants : HAPMAP102724231
Genomic Variants (DGV)C3orf86 [DGVbeta]
DECIPHERC3orf86 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisC3orf86 
Mutations
ICGC Data PortalC3orf86 
TCGA Data PortalC3orf86 
Broad Tumor PortalC3orf86
OASIS PortalC3orf86 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDC3orf86
BioMutasearch C3orf86
DgiDB (Drug Gene Interaction Database)C3orf86
DoCM (Curated mutations)C3orf86 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)C3orf86 (select a term)
intoGenC3orf86
Cancer3DC3orf86(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETC3orf86
MedgenC3orf86
Genetic Testing Registry C3orf86
NextProtP0DN24 [Medical]
TSGene102724231
GENETestsC3orf86
Target ValidationC3orf86
Huge Navigator C3orf86 [HugePedia]
snp3D : Map Gene to Disease102724231
BioCentury BCIQC3orf86
ClinGenC3orf86
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724231
Clinical trialC3orf86
Miscellaneous
canSAR (ICR)C3orf86 (select the gene name)
DataMed IndexC3orf86
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineC3orf86
EVEXC3orf86
GoPubMedC3orf86
iHOPC3orf86
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:22:02 CEST 2019

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