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C4orf54 (chromosome 4 open reading frame 54)

Identity

Other aliasFOPV
HGNC (Hugo) C4orf54
LocusID (NCBI) 285556
Atlas_Id 80442
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 99636531 and ends at 99654679 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)C4orf54   27741
Cards
Entrez_Gene (NCBI)C4orf54  285556  chromosome 4 open reading frame 54
AliasesFOPV
GeneCards (Weizmann)C4orf54
Ensembl hg19 (Hinxton)ENSG00000248713 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248713 [Gene_View]  ENSG00000248713 [Sequence]  chr4:99636531-99654679 [Contig_View]  C4orf54 [Vega]
ICGC DataPortalENSG00000248713
TCGA cBioPortalC4orf54
AceView (NCBI)C4orf54
Genatlas (Paris)C4orf54
WikiGenes285556
SOURCE (Princeton)C4orf54
Genetics Home Reference (NIH)C4orf54
Genomic and cartography
GoldenPath hg38 (UCSC)C4orf54  -     chr4:99636531-99654679 -  4q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)C4orf54  -     4q23   [Description]    (hg19-Feb_2009)
GoldenPathC4orf54 - 4q23 [CytoView hg19]  C4orf54 - 4q23 [CytoView hg38]
ImmunoBaseENSG00000248713
Mapping of homologs : NCBIC4orf54 [Mapview hg19]  C4orf54 [Mapview hg38]
OMIM617881   
Gene and transcription
Genbank (Entrez)AL832378 AL833279
RefSeq transcript (Entrez)NM_001354435
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)C4orf54
Cluster EST : UnigeneHs.480371 [ NCBI ]
CGAP (NCI)Hs.480371
Alternative Splicing GalleryENSG00000248713
Gene ExpressionC4orf54 [ NCBI-GEO ]   C4orf54 [ EBI - ARRAY_EXPRESS ]   C4orf54 [ SEEK ]   C4orf54 [ MEM ]
Gene Expression Viewer (FireBrowse)C4orf54 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285556
GTEX Portal (Tissue expression)C4orf54
Human Protein AtlasENSG00000248713-C4orf54 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)C4orf54
DMDM Disease mutations285556
Blocks (Seattle)C4orf54
Human Protein Atlas [tissue]ENSG00000248713-C4orf54 [tissue]
IPIIPI00888066   IPI00745180   
Protein Interaction databases
FunCoupENSG00000248713
BioGRIDC4orf54
STRING (EMBL)C4orf54
ZODIACC4orf54
Ontologies - Pathways
Huge Navigator C4orf54 [HugePedia]
snp3D : Map Gene to Disease285556
BioCentury BCIQC4orf54
ClinGenC4orf54
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285556
Clinical trialC4orf54
Miscellaneous
canSAR (ICR)C4orf54 (select the gene name)
DataMed IndexC4orf54
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineC4orf54
EVEXC4orf54
GoPubMedC4orf54
iHOPC4orf54
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:22:05 CEST 2019

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