CALCOCO1 (calcium binding and coiled-coil domain 1)

2014-08-01  

Identity

HGNC
CALCOCO1
LOCATION
12q13.13
LOCUSID
57658
ALIAS
Cocoa,PP13275,calphoglin
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 57658
HGNC: 29306
Ensembl: ENSG00000012822

Variants:

dbSNP: 57658
ClinVar: 57658
TCGA: ENSG00000012822
COSMIC: CALCOCO1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000012822ENST00000262059Q9P1Z2
ENSG00000012822ENST00000430117Q9P1Z2
ENSG00000012822ENST00000546443H3BRW8
ENSG00000012822ENST00000546619F8VRQ9
ENSG00000012822ENST00000548177F8VZI3
ENSG00000012822ENST00000548263Q9P1Z2
ENSG00000012822ENST00000549173F8VXS2
ENSG00000012822ENST00000549349F8VPN1
ENSG00000012822ENST00000549688F8VWP8
ENSG00000012822ENST00000549784F8W0X2
ENSG00000012822ENST00000550804Q9P1Z2
ENSG00000012822ENST00000550804A0A024RAZ1
ENSG00000012822ENST00000551900F8VQE3
ENSG00000012822ENST00000552623F8VUB3

Expression (GTEx)

0
50
100
150
200
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
191652322009Genome-wide association study of panic disorder in the Japanese population.31
163445502006Differential use of functional domains by coiled-coil coactivator in its synergistic coactivator function with beta-catenin or GRIP1.18
169315702006Role of the N-terminal activation domain of the coiled-coil coactivator in mediating transcriptional activation by beta-catenin.15
191834832009Screening and association testing of common coding variation in steroid hormone receptor co-activator and co-repressor genes in relation to breast cancer risk: the Multiethnic Cohort.14
155222202004Cellular signaling mediated by calphoglin-induced activation of IPP and PGM.3

Citation

Dessen P

CALCOCO1 (calcium binding and coiled-coil domain 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-08-01

Online version: http://atlasgeneticsoncology.org/gene/54189/calcoco1