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CAPZB (capping protein (actin filament) muscle Z-line, beta)

Identity

Other namesCAPB
CAPPB
CAPZ
HGNC (Hugo) CAPZB
LocusID (NCBI) 832
Location 1p36.13
Location_base_pair Starts at 19665267 and ends at 19812066 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CAPZB   1491
Entrez_Gene (NCBI)CAPZB  832  capping protein (actin filament) muscle Z-line, beta
Cards
GeneCards (Weizmann)CAPZB
Ensembl (Hinxton)ENSG00000077549 [Gene_View]  chr1:19665267-19812066 [Contig_View]  CAPZB [Vega]
AceView (NCBI)CAPZB
Genatlas (Paris)CAPZB
SOURCE (Stanford)NM_001206540 NM_001206541 NM_004930
Genomic and cartography
GoldenPath (UCSC)CAPZB  -  1p36.13   chr1:19665267-19812066 -  1p36.13   [Description]    (hg19-Feb_2009)
EnsemblCAPZB - 1p36.13 [CytoView]
Mapping of homologs : NCBICAPZB [Mapview]
OMIM601572   
Gene and transcription
Genbank (Entrez)AI799520 AK022336 AK125085 AK126650 AK301442
RefSeq transcript (SRS)NM_001206540 NM_001206541 NM_004930
RefSeq transcript (Entrez)NM_001206540 NM_001206541 NM_004930
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NG_029551 NT_004610 NW_001838573 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_029551 NT_004610 NW_001838573 NW_004077990
Consensus coding sequences : CCDS (NCBI)CAPZB
Cluster EST : UnigeneHs.432760 [ SRS ] Hs.432760 [ NCBI ]
CGAP (NCI)Hs.432760
Alternative Splicing : Fast-db (Paris)GSHG0001810
Alternative Splicing GalleryENSG00000077549
Gene ExpressionCAPZB [ NCBI-GEO ]   CAPZB [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP47756 (SRS) P47756 (Uniprot)
NextProtP47756
With graphics : InterProP47756
Splice isoforms : SwissVarP47756(Swissvar)
Domaine pattern : Prosite (SRS)F_ACTIN_CAPPING_BETA (PS00231)   
Domaine pattern : Prosite (Expaxy)F_ACTIN_CAPPING_BETA (PS00231)   
Domains : Interpro (SRS)F-actin_capping_bsu_CS    WASH_F-actin_cap_beta   
Domains : Interpro (EBI)F-actin_capping_bsu_CS    WASH_F-actin_cap_beta   
Related proteins : CluSTrP47756
Domain families : Pfam (SRS)F_actin_cap_B (PF01115)   
Domain families : Pfam (Sanger)F_actin_cap_B (PF01115)   
Domain families : Pfam (NCBI)pfam01115   
DMDM832
Blocks (Seattle)P47756
Human Protein AtlasENSG00000077549
HPRD11872
IPIIPI00026185   IPI00642256   IPI00218782   IPI00646047   IPI00903103   IPI01013714   
Protein Interaction databases
DIP (DOE-UCLA)P47756
IntAct (EBI)P47756
FunCoupENSG00000077549
REACTOMECAPZB
Protein Interaction Database832
BioGRIDCAPZB
InParanoidP47756
Interologous Interaction database P47756
IntegromeDBCAPZB
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CAPZB
SNP (GeneSNP Utah)CAPZB
SNP : HGBaseCAPZB
Genetic variants : HAPMAPCAPZB
Somatic Mutations in Cancer : COSMICCAPZB 
CONAN: Copy Number AnalysisCAPZB 
Mutations and Diseases : HGMDCAPZB
OMIM601572   
GENETests601572   
Disease Genetic AssociationCAPZB
Huge Navigator CAPZB [HugePedia]  CAPZB [HugeCancerGEM]
Genomic VariantsCAPZB  CAPZB [DGVbeta]
ClinVarCAPZB
snp3D : Map Gene to Disease832
General knowledge
Homologs : HomoloGeneCAPZB
Homology/Alignments : Family Browser (UCSC)CAPZB
Phylogenetic Trees/Animal Genes : TreeFamCAPZB
Chemical/Protein Interactions : CTD832
Chemical/Pharm GKB GenePA26072
Clinical trialCAPZB
Cancer Resource (Charite)ENSG00000077549
Ontology : AmiGOactin binding  cytosol  cytoskeleton  cellular component movement  cytoskeleton organization  blood coagulation  F-actin capping protein complex  actin cytoskeleton  membrane  regulation of cell morphogenesis  lamellipodium  lamellipodium assembly  actin cytoskeleton organization  cortical cytoskeleton  actin filament capping  WASH complex  
Ontology : EGO-EBIactin binding  cytosol  cytoskeleton  cellular component movement  cytoskeleton organization  blood coagulation  F-actin capping protein complex  actin cytoskeleton  membrane  regulation of cell morphogenesis  lamellipodium  lamellipodium assembly  actin cytoskeleton organization  cortical cytoskeleton  actin filament capping  WASH complex  
Other databases
Probes
Litterature
PubMed50 Pubmed reference(s) in Entrez
PubGeneCAPZB
iHOPCAPZB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:37:28 CEST 2013
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