CARF (calcium responsive transcription factor)

2018-12-01  

Identity

HGNC
CARF
LOCATION
2q33.2
LOCUSID
79800
ALIAS
ALS2CR8,NYD-SP24
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 79800
MIM: 607586
HGNC: 14435
Ensembl: ENSG00000138380

Variants:

dbSNP: 79800
ClinVar: 79800
TCGA: ENSG00000138380
COSMIC: CARF

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000138380ENST00000320443Q8N187
ENSG00000138380ENST00000402905Q8N187
ENSG00000138380ENST00000402905A0A024R427
ENSG00000138380ENST00000414439C9JI92
ENSG00000138380ENST00000414490C9JZ91
ENSG00000138380ENST00000414857C9JBK9
ENSG00000138380ENST00000422368F8WC01
ENSG00000138380ENST00000427712F8WDH0
ENSG00000138380ENST00000428585Q8N187
ENSG00000138380ENST00000430899C9JSN4
ENSG00000138380ENST00000431787C9JCD6
ENSG00000138380ENST00000432024A0A1B0GX63
ENSG00000138380ENST00000434998Q8N187
ENSG00000138380ENST00000438828Q8N187
ENSG00000138380ENST00000438828A0A024R427
ENSG00000138380ENST00000441569C9JT99
ENSG00000138380ENST00000443740C9JZI6
ENSG00000138380ENST00000444724F6SXV3
ENSG00000138380ENST00000445120C9JL40
ENSG00000138380ENST00000447539C9JN29
ENSG00000138380ENST00000457031F8WDW1

Expression (GTEx)

0
5
10
15
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
118322262002A calcium-responsive transcription factor, CaRF, that regulates neuronal activity-dependent expression of BDNF.107
293215612018Tumor suppressor activity of miR-451: Identification of CARF as a new target.3
297181362019Molecular Insights Into Withaferin-A-Induced Senescence: Bioinformatics and Experimental Evidence to the Role of NFκB and CARF.1

Citation

Dessen P

CARF (calcium responsive transcription factor)

Atlas Genet Cytogenet Oncol Haematol. 2018-12-01

Online version: http://atlasgeneticsoncology.org/gene/57781/carf