Atlas of Genetics and Cytogenetics in Oncology and Haematology


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X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

CASC1 (-)

Identity

Alias_namescancer susceptibility candidate 1
Alias_symbol (synonym)LAS1
FLJ10921
PPP1R54
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 55259
Atlas_Id 914
Location 12p12.1  [Link to chromosome band 12p12]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASC1 (12p12.1) / PLEKHA5 (12p12.3)TMTC1 (12p11.22) / CASC1 (12p12.1)CASC1 12p12.1 / PLEKHA5 12p12.3
TMTC1 12p11.22 / CASC1 12p12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(12;12)(p11;p12) TMTC1/CASC1
CASC1/PLEKHA5 (12p12)


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)CASC1  55259  -
Aliases
GeneCards (Weizmann)CASC1
Ensembl hg19 (Hinxton)ENSG00000118307 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118307 [Gene_View]  ENSG00000118307 [Sequence]  - [Contig_View]  CASC1 [Vega]
ICGC DataPortalENSG00000118307
TCGA cBioPortalCASC1
AceView (NCBI)CASC1
Genatlas (Paris)CASC1
WikiGenes55259
SOURCE (Princeton)CASC1
Genetics Home Reference (NIH)CASC1
Genomic and cartography
GoldenPath hg38 (UCSC)CASC1  -  
GoldenPath hg19 (UCSC)CASC1  -  
GoldenPathCASC1 - [CytoView hg19]  CASC1 - [CytoView hg38]
Genome Data Viewer NCBICASC1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC1
Alternative Splicing GalleryENSG00000118307
Gene ExpressionCASC1 [ NCBI-GEO ]   CASC1 [ EBI - ARRAY_EXPRESS ]   CASC1 [ SEEK ]   CASC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC1 [ Firebrowse - Broad ]
GenevisibleExpression of CASC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55259
GTEX Portal (Tissue expression)CASC1
Human Protein AtlasENSG00000118307-CASC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC1
DMDM Disease mutations55259
Human Protein Atlas [tissue]ENSG00000118307-CASC1 [tissue]
HPRD16684
IPIIPI00853432   IPI00853539   IPI00419958   IPI01012303   IPI00935400   IPI01025942   IPI01025361   IPI01025240   IPI01025569   IPI00477405   IPI00783066   
Protein Interaction databases
FunCoupENSG00000118307
BioGRIDCASC1
STRING (EMBL)CASC1
ZODIACCASC1
Ontologies - Pathways
snp3D : Map Gene to Disease55259
BioCentury BCIQCASC1
ClinGenCASC1
Clinical trials, drugs, therapy
Protein Interactions : CTD55259
Pharm GKB GenePA134895953
Clinical trialCASC1
Miscellaneous
canSAR (ICR)CASC1 (select the gene name)
HarmonizomeCASC1
DataMed IndexCASC1
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC1
EVEXCASC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 11 19:41:47 CEST 2020

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