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CASC9 (cancer susceptibility 9)

Identity

Alias (NCBI)ESCCAL-1
ESSCAL1
LINC00981
linc-JPH1
HGNC (Hugo) CASC9
HGNC Alias symbLINC00981
ESCCAL-1
linc-JPH1
HGNC Alias namelong intergenic non-protein coding RNA 981
 esophageal squamous cell carcinoma associated lncRNA-1
HGNC Previous namecancer susceptibility candidate 9 (non-protein coding)
 cancer susceptibility 9 (non-protein coding)
LocusID (NCBI) 101805492
Atlas_Id 53426
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 75223117 and ends at 75278481 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CASC9   48906
Cards
Entrez_Gene (NCBI)CASC9  101805492  cancer susceptibility 9
AliasesESCCAL-1; ESSCAL1; LINC00981; linc-JPH1
GeneCards (Weizmann)CASC9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr8:75223117-75278481 [Contig_View]  CASC9 [Vega]
TCGA cBioPortalCASC9
AceView (NCBI)CASC9
Genatlas (Paris)CASC9
WikiGenes101805492
SOURCE (Princeton)CASC9
Genetics Home Reference (NIH)CASC9
Genomic and cartography
GoldenPath hg38 (UCSC)CASC9  -     chr8:75223117-75278481 -  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASC9  -     8q21.13   [Description]    (hg19-Feb_2009)
GoldenPathCASC9 - 8q21.13 [CytoView hg19]  CASC9 - 8q21.13 [CytoView hg38]
genome Data Viewer NCBICASC9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI205540 BC062758 BE866214 CN273839 CN418510
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASC9
Gene ExpressionCASC9 [ NCBI-GEO ]   CASC9 [ EBI - ARRAY_EXPRESS ]   CASC9 [ SEEK ]   CASC9 [ MEM ]
Gene Expression Viewer (FireBrowse)CASC9 [ Firebrowse - Broad ]
GenevisibleExpression of CASC9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101805492
GTEX Portal (Tissue expression)CASC9
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CASC9
DMDM Disease mutations101805492
Blocks (Seattle)CASC9
Protein Interaction databases
BioGRIDCASC9
STRING (EMBL)CASC9
ZODIACCASC9
Ontologies - Pathways
Huge Navigator CASC9 [HugePedia]
snp3D : Map Gene to Disease101805492
BioCentury BCIQCASC9
ClinGenCASC9
Clinical trials, drugs, therapy
Protein Interactions : CTD101805492
Clinical trialCASC9
Miscellaneous
canSAR (ICR)CASC9 (select the gene name)
HarmonizomeCASC9
DataMed IndexCASC9
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASC9
EVEXCASC9
GoPubMedCASC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 15:06:05 CEST 2020

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