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CASTOR3 (CASTOR family member 3)

Identity

Other aliasGATS
STAG3OS
HGNC (Hugo) CASTOR3
LocusID (NCBI) 352954
Atlas_Id 80352
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100200655 and ends at 100272232 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CASTOR3   29954
Cards
Entrez_Gene (NCBI)CASTOR3  352954  CASTOR family member 3
AliasesGATS; STAG3OS
GeneCards (Weizmann)CASTOR3
Ensembl hg19 (Hinxton)ENSG00000239521 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239521 [Gene_View]  ENSG00000239521 [Sequence]  chr7:100200655-100272232 [Contig_View]  CASTOR3 [Vega]
ICGC DataPortalENSG00000239521
TCGA cBioPortalCASTOR3
AceView (NCBI)CASTOR3
Genatlas (Paris)CASTOR3
WikiGenes352954
SOURCE (Princeton)CASTOR3
Genetics Home Reference (NIH)CASTOR3
Genomic and cartography
GoldenPath hg38 (UCSC)CASTOR3  -     chr7:100200655-100272232 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CASTOR3  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCASTOR3 - 7q22.1 [CytoView hg19]  CASTOR3 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000239521
Mapping of homologs : NCBICASTOR3 [Mapview hg19]  CASTOR3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055399 AK056608 AK091418 AK092358 AK095056
RefSeq transcript (Entrez)NM_178831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CASTOR3
Cluster EST : UnigeneHs.556063 [ NCBI ]
CGAP (NCI)Hs.556063
Alternative Splicing GalleryENSG00000239521
Gene ExpressionCASTOR3 [ NCBI-GEO ]   CASTOR3 [ EBI - ARRAY_EXPRESS ]   CASTOR3 [ SEEK ]   CASTOR3 [ MEM ]
Gene Expression Viewer (FireBrowse)CASTOR3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)352954
GTEX Portal (Tissue expression)CASTOR3
Human Protein AtlasENSG00000239521-CASTOR3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NAP1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NAP1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NAP1
Splice isoforms : SwissVarQ8NAP1
PhosPhoSitePlusQ8NAP1
Domains : Interpro (EBI)CASTOR_ACT_dom    CASTOR_fam   
Domain families : Pfam (Sanger)ACT_7 (PF13840)   
Domain families : Pfam (NCBI)pfam13840   
Conserved Domain (NCBI)CASTOR3
DMDM Disease mutations352954
Blocks (Seattle)CASTOR3
SuperfamilyQ8NAP1
Human Protein Atlas [tissue]ENSG00000239521-CASTOR3 [tissue]
Peptide AtlasQ8NAP1
IPIIPI00550403   IPI00844574   IPI00251446   
Protein Interaction databases
DIP (DOE-UCLA)Q8NAP1
IntAct (EBI)Q8NAP1
FunCoupENSG00000239521
BioGRIDCASTOR3
STRING (EMBL)CASTOR3
ZODIACCASTOR3
Ontologies - Pathways
QuickGOQ8NAP1
Ontology : AmiGOcytosol  GATOR2 complex  regulation of intracellular signal transduction  cellular response to L-arginine  negative regulation of TORC1 signaling  
Ontology : EGO-EBIcytosol  GATOR2 complex  regulation of intracellular signal transduction  cellular response to L-arginine  negative regulation of TORC1 signaling  
NDEx NetworkCASTOR3
Atlas of Cancer Signalling NetworkCASTOR3
Wikipedia pathwaysCASTOR3
Orthology - Evolution
OrthoDB352954
GeneTree (enSembl)ENSG00000239521
Phylogenetic Trees/Animal Genes : TreeFamCASTOR3
HOGENOMQ8NAP1
Homologs : HomoloGeneCASTOR3
Homology/Alignments : Family Browser (UCSC)CASTOR3
Gene fusions - Rearrangements
Fusion : QuiverCASTOR3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCASTOR3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CASTOR3
dbVarCASTOR3
ClinVarCASTOR3
1000_GenomesCASTOR3 
Exome Variant ServerCASTOR3
ExAC (Exome Aggregation Consortium)ENSG00000239521
GNOMAD BrowserENSG00000239521
Varsome BrowserCASTOR3
Genetic variants : HAPMAP352954
Genomic Variants (DGV)CASTOR3 [DGVbeta]
DECIPHERCASTOR3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCASTOR3 
Mutations
ICGC Data PortalCASTOR3 
TCGA Data PortalCASTOR3 
Broad Tumor PortalCASTOR3
OASIS PortalCASTOR3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCASTOR3
BioMutasearch CASTOR3
DgiDB (Drug Gene Interaction Database)CASTOR3
DoCM (Curated mutations)CASTOR3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CASTOR3 (select a term)
intoGenCASTOR3
Cancer3DCASTOR3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCASTOR3
MedgenCASTOR3
Genetic Testing Registry CASTOR3
NextProtQ8NAP1 [Medical]
TSGene352954
GENETestsCASTOR3
Target ValidationCASTOR3
Huge Navigator CASTOR3 [HugePedia]
snp3D : Map Gene to Disease352954
BioCentury BCIQCASTOR3
ClinGenCASTOR3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD352954
Chemical/Pharm GKB GenePA164720213
Clinical trialCASTOR3
Miscellaneous
canSAR (ICR)CASTOR3 (select the gene name)
DataMed IndexCASTOR3
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCASTOR3
EVEXCASTOR3
GoPubMedCASTOR3
iHOPCASTOR3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:22:46 CEST 2019

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