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CCDC200 (coiled-coil domain containing 200)

Identity

Other aliasLINC00854
TMEM106A-AS1
HGNC (Hugo) CCDC200
LocusID (NCBI) 100874261
Atlas_Id 80432
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 43221417 and ends at 43228596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CCDC200   43658
Cards
Entrez_Gene (NCBI)CCDC200  100874261  coiled-coil domain containing 200
AliasesLINC00854; TMEM106A-AS1
GeneCards (Weizmann)CCDC200
Ensembl hg19 (Hinxton)ENSG00000236383 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236383 [Gene_View]  ENSG00000236383 [Sequence]  chr17:43221417-43228596 [Contig_View]  CCDC200 [Vega]
ICGC DataPortalENSG00000236383
TCGA cBioPortalCCDC200
AceView (NCBI)CCDC200
Genatlas (Paris)CCDC200
WikiGenes100874261
SOURCE (Princeton)CCDC200
Genetics Home Reference (NIH)CCDC200
Genomic and cartography
GoldenPath hg38 (UCSC)CCDC200  -     chr17:43221417-43228596 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CCDC200  -     17q21.31   [Description]    (hg19-Feb_2009)
GoldenPathCCDC200 - 17q21.31 [CytoView hg19]  CCDC200 - 17q21.31 [CytoView hg38]
ImmunoBaseENSG00000236383
Mapping of homologs : NCBICCDC200 [Mapview hg19]  CCDC200 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC073918
RefSeq transcript (Entrez)NM_001363254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CCDC200
Cluster EST : UnigeneHs.546898 [ NCBI ]
CGAP (NCI)Hs.546898
Alternative Splicing GalleryENSG00000236383
Gene ExpressionCCDC200 [ NCBI-GEO ]   CCDC200 [ EBI - ARRAY_EXPRESS ]   CCDC200 [ SEEK ]   CCDC200 [ MEM ]
Gene Expression Viewer (FireBrowse)CCDC200 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874261
GTEX Portal (Tissue expression)CCDC200
Human Protein AtlasENSG00000236383-CCDC200 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CCDC200
DMDM Disease mutations100874261
Blocks (Seattle)CCDC200
Human Protein Atlas [tissue]ENSG00000236383-CCDC200 [tissue]
Protein Interaction databases
FunCoupENSG00000236383
BioGRIDCCDC200
STRING (EMBL)CCDC200
ZODIACCCDC200
Ontologies - Pathways
Huge Navigator CCDC200 [HugePedia]
snp3D : Map Gene to Disease100874261
BioCentury BCIQCCDC200
ClinGenCCDC200
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874261
Clinical trialCCDC200
Miscellaneous
canSAR (ICR)CCDC200 (select the gene name)
DataMed IndexCCDC200
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCCDC200
EVEXCCDC200
GoPubMedCCDC200
iHOPCCDC200
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 15:23:06 CEST 2019

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