Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CDADC1 (cytidine and dCMP deaminase domain containing 1)

Identity

Alias (NCBI)NYD-SP15
bA103J18.1
HGNC (Hugo) CDADC1
HGNC Alias symbNYD-SP15
LocusID (NCBI) 81602
Atlas_Id 61628
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49247911 and ends at 49293486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EFL1 (15q25.2) / CDADC1 (13q14.2)VPS13B (8q22.2) / CDADC1 (13q14.2)VPS13B CDADC1
EFTUD1 CDADC1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(8;13)(q22;q14) VPS13B/CDADC1

External links

Nomenclature
HGNC (Hugo)CDADC1   20299
Cards
Entrez_Gene (NCBI)CDADC1  81602  cytidine and dCMP deaminase domain containing 1
AliasesNYD-SP15; bA103J18.1
GeneCards (Weizmann)CDADC1
Ensembl hg19 (Hinxton)ENSG00000102543 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102543 [Gene_View]  ENSG00000102543 [Sequence]  chr13:49247911-49293486 [Contig_View]  CDADC1 [Vega]
ICGC DataPortalENSG00000102543
TCGA cBioPortalCDADC1
AceView (NCBI)CDADC1
Genatlas (Paris)CDADC1
WikiGenes81602
SOURCE (Princeton)CDADC1
Genetics Home Reference (NIH)CDADC1
Genomic and cartography
GoldenPath hg38 (UCSC)CDADC1  -     chr13:49247911-49293486 +  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDADC1  -     13q14.2   [Description]    (hg19-Feb_2009)
GoldenPathCDADC1 - 13q14.2 [CytoView hg19]  CDADC1 - 13q14.2 [CytoView hg38]
ImmunoBaseENSG00000102543
genome Data Viewer NCBICDADC1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK297400 AK312835 AL137554 AV648588 AY027525
RefSeq transcript (Entrez)NM_001193478 NM_030911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDADC1
Alternative Splicing GalleryENSG00000102543
Gene ExpressionCDADC1 [ NCBI-GEO ]   CDADC1 [ EBI - ARRAY_EXPRESS ]   CDADC1 [ SEEK ]   CDADC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CDADC1 [ Firebrowse - Broad ]
GenevisibleExpression of CDADC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81602
GTEX Portal (Tissue expression)CDADC1
Human Protein AtlasENSG00000102543-CDADC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWV3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWV3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWV3
Splice isoforms : SwissVarQ9BWV3
PhosPhoSitePlusQ9BWV3
Domaine pattern : Prosite (Expaxy)CYT_DCMP_DEAMINASES_1 (PS00903)    CYT_DCMP_DEAMINASES_2 (PS51747)   
Domains : Interpro (EBI)APOBEC/CMP_deaminase_Zn-bd    CMP_dCMP_dom    Cytidine_deaminase-like    dCMP_deaminase-rel    Deoxycytidylate_deaminase_dom   
Domain families : Pfam (Sanger)dCMP_cyt_deam_1 (PF00383)   
Domain families : Pfam (NCBI)pfam00383   
Conserved Domain (NCBI)CDADC1
DMDM Disease mutations81602
Blocks (Seattle)CDADC1
SuperfamilyQ9BWV3
Human Protein Atlas [tissue]ENSG00000102543-CDADC1 [tissue]
Peptide AtlasQ9BWV3
HPRD16693
IPIIPI00008444   IPI00513939   IPI00855793   IPI00979933   IPI01018321   IPI00844211   IPI00844098   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWV3
IntAct (EBI)Q9BWV3
FunCoupENSG00000102543
BioGRIDCDADC1
STRING (EMBL)CDADC1
ZODIACCDADC1
Ontologies - Pathways
QuickGOQ9BWV3
Ontology : AmiGOcytidine deaminase activity  dCMP deaminase activity  nucleus  cytoplasm  cytoplasm  dUMP biosynthetic process  dTMP biosynthetic process  zinc ion binding  cytidine deamination  protein homodimerization activity  importin-alpha family protein binding  DNA cytosine deamination  
Ontology : EGO-EBIcytidine deaminase activity  dCMP deaminase activity  nucleus  cytoplasm  cytoplasm  dUMP biosynthetic process  dTMP biosynthetic process  zinc ion binding  cytidine deamination  protein homodimerization activity  importin-alpha family protein binding  DNA cytosine deamination  
NDEx NetworkCDADC1
Atlas of Cancer Signalling NetworkCDADC1
Wikipedia pathwaysCDADC1
Orthology - Evolution
OrthoDB81602
GeneTree (enSembl)ENSG00000102543
Phylogenetic Trees/Animal Genes : TreeFamCDADC1
HOGENOMQ9BWV3
Homologs : HomoloGeneCDADC1
Homology/Alignments : Family Browser (UCSC)CDADC1
Gene fusions - Rearrangements
Fusion PortalVPS13B CDADC1
Fusion PortalEFTUD1 CDADC1
Fusion : QuiverCDADC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDADC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDADC1
dbVarCDADC1
ClinVarCDADC1
1000_GenomesCDADC1 
Exome Variant ServerCDADC1
GNOMAD BrowserENSG00000102543
Varsome BrowserCDADC1
Genetic variants : HAPMAP81602
Genomic Variants (DGV)CDADC1 [DGVbeta]
DECIPHERCDADC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDADC1 
Mutations
ICGC Data PortalCDADC1 
TCGA Data PortalCDADC1 
Broad Tumor PortalCDADC1
OASIS PortalCDADC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCDADC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCDADC1
Mutations and Diseases : HGMDCDADC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CDADC1
DgiDB (Drug Gene Interaction Database)CDADC1
DoCM (Curated mutations)CDADC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDADC1 (select a term)
intoGenCDADC1
Cancer3DCDADC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDADC1
MedgenCDADC1
Genetic Testing Registry CDADC1
NextProtQ9BWV3 [Medical]
TSGene81602
GENETestsCDADC1
Target ValidationCDADC1
Huge Navigator CDADC1 [HugePedia]
snp3D : Map Gene to Disease81602
BioCentury BCIQCDADC1
ClinGenCDADC1
Clinical trials, drugs, therapy
Protein Interactions : CTD81602
Pharm GKB GenePA134884656
Clinical trialCDADC1
Miscellaneous
canSAR (ICR)CDADC1 (select the gene name)
HarmonizomeCDADC1
DataMed IndexCDADC1
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDADC1
EVEXCDADC1
GoPubMedCDADC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:51:03 CEST 2020
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