Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CDH16 (cadherin 16, KSP-cadherin)

Identity

Other names-
HGNC (Hugo) CDH16
LocusID (NCBI) 1014
Location 16q22.1
Location_base_pair Starts at 66942025 and ends at 66952887 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDH16   1755
Entrez_Gene (NCBI)CDH16  1014  cadherin 16, KSP-cadherin
Cards
GeneCards (Weizmann)CDH16
Ensembl (Hinxton)ENSG00000166589 [Gene_View]  chr16:66942025-66952887 [Contig_View]  CDH16 [Vega]
AceView (NCBI)CDH16
Genatlas (Paris)CDH16
SOURCE (Stanford)NM_001204744 NM_001204745 NM_001204746 NM_004062
Genomic and cartography
GoldenPath (UCSC)CDH16  -  16q22.1   chr16:66942025-66952887 -  16q22.1   [Description]    (hg19-Feb_2009)
EnsemblCDH16 - 16q22.1 [CytoView]
Mapping of homologs : NCBICDH16 [Mapview]
OMIM603118   
Gene and transcription
Genbank (Entrez)AF016272 AI733140 AK075243 AK225544 AK225552
RefSeq transcript (SRS)NM_001204744 NM_001204745 NM_001204746 NM_004062
RefSeq transcript (Entrez)NM_001204744 NM_001204745 NM_001204746 NM_004062
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838290 NW_004078087
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010498 NW_001838290 NW_004078087
Consensus coding sequences : CCDS (NCBI)CDH16
Cluster EST : UnigeneHs.513660 [ SRS ] Hs.513660 [ NCBI ]
CGAP (NCI)Hs.513660
Alternative Splicing : Fast-db (Paris)GSHG0011899
Alternative Splicing GalleryENSG00000166589
Gene ExpressionCDH16 [ NCBI-GEO ]   CDH16 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75309 (SRS) O75309 (Uniprot)
NextProtO75309
With graphics : InterProO75309
Splice isoforms : SwissVarO75309(Swissvar)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domaine pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS   
Related proteins : CluSTrO75309
Domain families : Pfam (SRS)Cadherin (PF00028)   
Domain families : Pfam (Sanger)Cadherin (PF00028)   
Domain families : Pfam (NCBI)pfam00028   
Domain families : Smart (EMBL)CA (SM00112)  
DMDM1014
Blocks (Seattle)O75309
Human Protein AtlasENSG00000166589
HPRD11929
IPIIPI00025240   IPI00556336   IPI01008732   IPI01008929   
Protein Interaction databases
DIP (DOE-UCLA)O75309
IntAct (EBI)O75309
FunCoupENSG00000166589
REACTOMECDH16
Protein Interaction Database1014
BioGRIDCDH16
InParanoidO75309
Interologous Interaction database O75309
IntegromeDBCDH16
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CDH16
SNP (GeneSNP Utah)CDH16
SNP : HGBaseCDH16
Genetic variants : HAPMAPCDH16
Somatic Mutations in Cancer : COSMICCDH16 
CONAN: Copy Number AnalysisCDH16 
Mutations and Diseases : HGMDCDH16
OMIM603118   
GENETests603118   
Disease Genetic AssociationCDH16
Huge Navigator CDH16 [HugePedia]  CDH16 [HugeCancerGEM]
Genomic VariantsCDH16  CDH16 [DGVbeta]
snp3D : Map Gene to Disease1014
General knowledge
Homologs : HomoloGeneCDH16
Homology/Alignments : Family Browser (UCSC)CDH16
Phylogenetic Trees/Animal Genes : TreeFamCDH16
Chemical/Protein Interactions : CTD1014
Chemical/Pharm GKB GenePA26289
Clinical trialCDH16
Cancer Resource (Charite)ENSG00000166589
Ontology : AmiGOcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  
Ontology : EGO-EBIcalcium ion binding  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
PubGeneCDH16
iHOPCDH16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:07 CEST 2013
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