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CDIPTOSP (CDIP transferase opposite strand, pseudogene)

Identity

Other aliasCDIPT-AS1
HGNC (Hugo) CDIPTOSP
LocusID (NCBI) 440356
Atlas_Id 80312
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29863683 and ends at 29868053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CDIPTOSP   48609
Cards
Entrez_Gene (NCBI)CDIPTOSP  440356  CDIP transferase opposite strand, pseudogene
AliasesCDIPT-AS1
GeneCards (Weizmann)CDIPTOSP
Ensembl hg19 (Hinxton)ENSG00000214725 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214725 [Gene_View]  ENSG00000214725 [Sequence]  chr16:29863683-29868053 [Contig_View]  CDIPTOSP [Vega]
ICGC DataPortalENSG00000214725
TCGA cBioPortalCDIPTOSP
AceView (NCBI)CDIPTOSP
Genatlas (Paris)CDIPTOSP
WikiGenes440356
SOURCE (Princeton)CDIPTOSP
Genetics Home Reference (NIH)CDIPTOSP
Genomic and cartography
GoldenPath hg38 (UCSC)CDIPTOSP  -     chr16:29863683-29868053 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CDIPTOSP  -     16p11.2   [Description]    (hg19-Feb_2009)
GoldenPathCDIPTOSP - 16p11.2 [CytoView hg19]  CDIPTOSP - 16p11.2 [CytoView hg38]
ImmunoBaseENSG00000214725
Mapping of homologs : NCBICDIPTOSP [Mapview hg19]  CDIPTOSP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI269516 AK131031 BC070380 BC119017 BC119809
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CDIPTOSP
Alternative Splicing GalleryENSG00000214725
Gene ExpressionCDIPTOSP [ NCBI-GEO ]   CDIPTOSP [ EBI - ARRAY_EXPRESS ]   CDIPTOSP [ SEEK ]   CDIPTOSP [ MEM ]
Gene Expression Viewer (FireBrowse)CDIPTOSP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440356
GTEX Portal (Tissue expression)CDIPTOSP
Human Protein AtlasENSG00000214725-CDIPTOSP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DO92   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DO92  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DO92
Splice isoforms : SwissVarP0DO92
PhosPhoSitePlusP0DO92
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CDIPTOSP
DMDM Disease mutations440356
Blocks (Seattle)CDIPTOSP
SuperfamilyP0DO92
Human Protein Atlas [tissue]ENSG00000214725-CDIPTOSP [tissue]
Peptide AtlasP0DO92
IPIIPI00644856   
Protein Interaction databases
DIP (DOE-UCLA)P0DO92
IntAct (EBI)P0DO92
FunCoupENSG00000214725
BioGRIDCDIPTOSP
STRING (EMBL)CDIPTOSP
ZODIACCDIPTOSP
Ontologies - Pathways
QuickGOP0DO92
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCDIPTOSP
Atlas of Cancer Signalling NetworkCDIPTOSP
Wikipedia pathwaysCDIPTOSP
Orthology - Evolution
OrthoDB440356
GeneTree (enSembl)ENSG00000214725
Phylogenetic Trees/Animal Genes : TreeFamCDIPTOSP
HOGENOMP0DO92
Homologs : HomoloGeneCDIPTOSP
Homology/Alignments : Family Browser (UCSC)CDIPTOSP
Gene fusions - Rearrangements
Fusion : QuiverCDIPTOSP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCDIPTOSP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CDIPTOSP
dbVarCDIPTOSP
ClinVarCDIPTOSP
1000_GenomesCDIPTOSP 
Exome Variant ServerCDIPTOSP
ExAC (Exome Aggregation Consortium)ENSG00000214725
GNOMAD BrowserENSG00000214725
Varsome BrowserCDIPTOSP
Genetic variants : HAPMAP440356
Genomic Variants (DGV)CDIPTOSP [DGVbeta]
DECIPHERCDIPTOSP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCDIPTOSP 
Mutations
ICGC Data PortalCDIPTOSP 
TCGA Data PortalCDIPTOSP 
Broad Tumor PortalCDIPTOSP
OASIS PortalCDIPTOSP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCDIPTOSP
BioMutasearch CDIPTOSP
DgiDB (Drug Gene Interaction Database)CDIPTOSP
DoCM (Curated mutations)CDIPTOSP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CDIPTOSP (select a term)
intoGenCDIPTOSP
Cancer3DCDIPTOSP(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCDIPTOSP
MedgenCDIPTOSP
Genetic Testing Registry CDIPTOSP
NextProtP0DO92 [Medical]
TSGene440356
GENETestsCDIPTOSP
Target ValidationCDIPTOSP
Huge Navigator CDIPTOSP [HugePedia]
snp3D : Map Gene to Disease440356
BioCentury BCIQCDIPTOSP
ClinGenCDIPTOSP
Clinical trials, drugs, therapy
Protein Interactions : CTD440356
Clinical trialCDIPTOSP
Miscellaneous
canSAR (ICR)CDIPTOSP (select the gene name)
HarmonizomeCDIPTOSP
DataMed IndexCDIPTOSP
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCDIPTOSP
EVEXCDIPTOSP
GoPubMedCDIPTOSP
iHOPCDIPTOSP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 19:36:47 CEST 2020

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