Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CELF3 (CUGBP Elav-like family member 3)

Identity

Alias_namesTNRC4
trinucleotide repeat containing 4
Alias_symbol (synonym)CAGH4
BRUNOL1
ERDA4
MGC57297
Other aliasETR-1
HGNC (Hugo) CELF3
LocusID (NCBI) 11189
Atlas_Id 61695
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151700058 and ends at 151716316 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CELF3   11967
Cards
Entrez_Gene (NCBI)CELF3  11189  CUGBP Elav-like family member 3
AliasesBRUNOL1; CAGH4; ERDA4; ETR-1; 
TNRC4
GeneCards (Weizmann)CELF3
Ensembl hg19 (Hinxton)ENSG00000159409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159409 [Gene_View]  ENSG00000159409 [Sequence]  chr1:151700058-151716316 [Contig_View]  CELF3 [Vega]
ICGC DataPortalENSG00000159409
TCGA cBioPortalCELF3
AceView (NCBI)CELF3
Genatlas (Paris)CELF3
WikiGenes11189
SOURCE (Princeton)CELF3
Genetics Home Reference (NIH)CELF3
Genomic and cartography
GoldenPath hg38 (UCSC)CELF3  -     chr1:151700058-151716316 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CELF3  -     1q21.3   [Description]    (hg19-Feb_2009)
GoldenPathCELF3 - 1q21.3 [CytoView hg19]  CELF3 - 1q21.3 [CytoView hg38]
ImmunoBaseENSG00000159409
Mapping of homologs : NCBICELF3 [Mapview hg19]  CELF3 [Mapview hg38]
OMIM612678   
Gene and transcription
Genbank (Entrez)AB209264 AF284423 AF329264 AK123206 AK298852
RefSeq transcript (Entrez)NM_001172648 NM_001172649 NM_001291106 NM_001291107 NM_007185
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CELF3
Cluster EST : UnigeneHs.26047 [ NCBI ]
CGAP (NCI)Hs.26047
Alternative Splicing GalleryENSG00000159409
Gene ExpressionCELF3 [ NCBI-GEO ]   CELF3 [ EBI - ARRAY_EXPRESS ]   CELF3 [ SEEK ]   CELF3 [ MEM ]
Gene Expression Viewer (FireBrowse)CELF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11189
GTEX Portal (Tissue expression)CELF3
Human Protein AtlasENSG00000159409-CELF3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZQ8
Splice isoforms : SwissVarQ5SZQ8
PhosPhoSitePlusQ5SZQ8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)CELF3/4/5/6_RRM1    Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)CELF3
DMDM Disease mutations11189
Blocks (Seattle)CELF3
PDB (RSDB)2DNO   
PDB Europe2DNO   
PDB (PDBSum)2DNO   
PDB (IMB)2DNO   
Structural Biology KnowledgeBase2DNO   
SCOP (Structural Classification of Proteins)2DNO   
CATH (Classification of proteins structures)2DNO   
SuperfamilyQ5SZQ8
Human Protein Atlas [tissue]ENSG00000159409-CELF3 [tissue]
Peptide AtlasQ5SZQ8
HPRD18210
IPIIPI00852999   IPI00852836   IPI00852895   IPI00909704   IPI00748617   IPI00382622   IPI00293640   IPI00386736   IPI00644868   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZQ8
IntAct (EBI)Q5SZQ8
FunCoupENSG00000159409
BioGRIDCELF3
STRING (EMBL)CELF3
ZODIACCELF3
Ontologies - Pathways
QuickGOQ5SZQ8
Ontology : AmiGOregulation of alternative mRNA splicing, via spliceosome  regulation of alternative mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA binding  nucleus  nucleus  cytoplasm  cytoplasm  mRNA splice site selection  spermatogenesis  RNA splicing  nuclear body  flagellated sperm motility  nuclear body organization  pre-mRNA binding  positive regulation of mRNA splicing, via spliceosome  7SK snRNA binding  ncRNA transcription  ribonucleoprotein complex  
Ontology : EGO-EBIregulation of alternative mRNA splicing, via spliceosome  regulation of alternative mRNA splicing, via spliceosome  RNA binding  RNA binding  mRNA binding  nucleus  nucleus  cytoplasm  cytoplasm  mRNA splice site selection  spermatogenesis  RNA splicing  nuclear body  flagellated sperm motility  nuclear body organization  pre-mRNA binding  positive regulation of mRNA splicing, via spliceosome  7SK snRNA binding  ncRNA transcription  ribonucleoprotein complex  
NDEx NetworkCELF3
Atlas of Cancer Signalling NetworkCELF3
Wikipedia pathwaysCELF3
Orthology - Evolution
OrthoDB11189
GeneTree (enSembl)ENSG00000159409
Phylogenetic Trees/Animal Genes : TreeFamCELF3
HOGENOMQ5SZQ8
Homologs : HomoloGeneCELF3
Homology/Alignments : Family Browser (UCSC)CELF3
Gene fusions - Rearrangements
Fusion : QuiverCELF3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCELF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CELF3
dbVarCELF3
ClinVarCELF3
1000_GenomesCELF3 
Exome Variant ServerCELF3
ExAC (Exome Aggregation Consortium)ENSG00000159409
GNOMAD BrowserENSG00000159409
Varsome BrowserCELF3
Genetic variants : HAPMAP11189
Genomic Variants (DGV)CELF3 [DGVbeta]
DECIPHERCELF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCELF3 
Mutations
ICGC Data PortalCELF3 
TCGA Data PortalCELF3 
Broad Tumor PortalCELF3
OASIS PortalCELF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCELF3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCELF3
Mutations and Diseases : HGMDCELF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CELF3
DgiDB (Drug Gene Interaction Database)CELF3
DoCM (Curated mutations)CELF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CELF3 (select a term)
intoGenCELF3
Cancer3DCELF3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612678   
Orphanet
DisGeNETCELF3
MedgenCELF3
Genetic Testing Registry CELF3
NextProtQ5SZQ8 [Medical]
TSGene11189
GENETestsCELF3
Target ValidationCELF3
Huge Navigator CELF3 [HugePedia]
snp3D : Map Gene to Disease11189
BioCentury BCIQCELF3
ClinGenCELF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11189
Chemical/Pharm GKB GenePA36654
Clinical trialCELF3
Miscellaneous
canSAR (ICR)CELF3 (select the gene name)
DataMed IndexCELF3
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCELF3
EVEXCELF3
GoPubMedCELF3
iHOPCELF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Sep 3 15:23:33 CEST 2019

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