Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CEP41 (centrosomal protein 41)

Identity

Alias_namesTSGA14
testis specific, 14
centrosomal protein 41kDa
Alias_symbol (synonym)DKFZp762H1311
FLJ22445
JBTS15
Other alias
HGNC (Hugo) CEP41
LocusID (NCBI) 95681
Atlas_Id 61724
Location 7q32.2  [Link to chromosome band 7q32]
Location_base_pair Starts at 130393771 and ends at 130441210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CEP41   12370
Cards
Entrez_Gene (NCBI)CEP41  95681  centrosomal protein 41
AliasesJBTS15; TSGA14
GeneCards (Weizmann)CEP41
Ensembl hg19 (Hinxton)ENSG00000106477 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106477 [Gene_View]  ENSG00000106477 [Sequence]  chr7:130393771-130441210 [Contig_View]  CEP41 [Vega]
ICGC DataPortalENSG00000106477
TCGA cBioPortalCEP41
AceView (NCBI)CEP41
Genatlas (Paris)CEP41
WikiGenes95681
SOURCE (Princeton)CEP41
Genetics Home Reference (NIH)CEP41
Genomic and cartography
GoldenPath hg38 (UCSC)CEP41  -     chr7:130393771-130441210 -  7q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CEP41  -     7q32.2   [Description]    (hg19-Feb_2009)
GoldenPathCEP41 - 7q32.2 [CytoView hg19]  CEP41 - 7q32.2 [CytoView hg38]
ImmunoBaseENSG00000106477
Mapping of homologs : NCBICEP41 [Mapview hg19]  CEP41 [Mapview hg38]
OMIM610523   614464   
Gene and transcription
Genbank (Entrez)AF429308 AF429309 AJ278890 AK001820 AK026098
RefSeq transcript (Entrez)NM_001257158 NM_001257159 NM_001257160 NM_018718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CEP41
Cluster EST : UnigeneHs.732631 [ NCBI ]
CGAP (NCI)Hs.732631
Alternative Splicing GalleryENSG00000106477
Gene ExpressionCEP41 [ NCBI-GEO ]   CEP41 [ EBI - ARRAY_EXPRESS ]   CEP41 [ SEEK ]   CEP41 [ MEM ]
Gene Expression Viewer (FireBrowse)CEP41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)95681
GTEX Portal (Tissue expression)CEP41
Human Protein AtlasENSG00000106477-CEP41 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BYV8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BYV8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BYV8
Splice isoforms : SwissVarQ9BYV8
PhosPhoSitePlusQ9BYV8
Domaine pattern : Prosite (Expaxy)RHODANESE_3 (PS50206)   
Domains : Interpro (EBI)Rhodanese-like_dom    Rhodanese-like_dom_sf   
Domain families : Pfam (Sanger)Rhodanese (PF00581)   
Domain families : Pfam (NCBI)pfam00581   
Domain families : Smart (EMBL)RHOD (SM00450)  
Conserved Domain (NCBI)CEP41
DMDM Disease mutations95681
Blocks (Seattle)CEP41
SuperfamilyQ9BYV8
Human Protein Atlas [tissue]ENSG00000106477-CEP41 [tissue]
Peptide AtlasQ9BYV8
HPRD15574
IPIIPI00019448   IPI00385062   IPI00514880   IPI00168911   IPI01012223   IPI00945922   IPI00944962   IPI00945925   IPI00946554   IPI00946720   IPI00946120   IPI00945727   
Protein Interaction databases
DIP (DOE-UCLA)Q9BYV8
IntAct (EBI)Q9BYV8
FunCoupENSG00000106477
BioGRIDCEP41
STRING (EMBL)CEP41
ZODIACCEP41
Ontologies - Pathways
QuickGOQ9BYV8
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cilium  regulation of G2/M transition of mitotic cell cycle  protein transport  membrane  protein polyglutamylation  ciliary basal body  cilium assembly  ciliary basal body-plasma membrane docking  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein binding  centrosome  centriole  cytosol  cilium  regulation of G2/M transition of mitotic cell cycle  protein transport  membrane  protein polyglutamylation  ciliary basal body  cilium assembly  ciliary basal body-plasma membrane docking  
NDEx NetworkCEP41
Atlas of Cancer Signalling NetworkCEP41
Wikipedia pathwaysCEP41
Orthology - Evolution
OrthoDB95681
GeneTree (enSembl)ENSG00000106477
Phylogenetic Trees/Animal Genes : TreeFamCEP41
HOGENOMQ9BYV8
Homologs : HomoloGeneCEP41
Homology/Alignments : Family Browser (UCSC)CEP41
Gene fusions - Rearrangements
Fusion : QuiverCEP41
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCEP41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CEP41
dbVarCEP41
ClinVarCEP41
1000_GenomesCEP41 
Exome Variant ServerCEP41
ExAC (Exome Aggregation Consortium)ENSG00000106477
GNOMAD BrowserENSG00000106477
Varsome BrowserCEP41
Genetic variants : HAPMAP95681
Genomic Variants (DGV)CEP41 [DGVbeta]
DECIPHERCEP41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCEP41 
Mutations
ICGC Data PortalCEP41 
TCGA Data PortalCEP41 
Broad Tumor PortalCEP41
OASIS PortalCEP41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCEP41  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCEP41
Mutations and Diseases : HGMDCEP41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CEP41
DgiDB (Drug Gene Interaction Database)CEP41
DoCM (Curated mutations)CEP41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CEP41 (select a term)
intoGenCEP41
Cancer3DCEP41(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610523    614464   
Orphanet1022    18916   
DisGeNETCEP41
MedgenCEP41
Genetic Testing Registry CEP41
NextProtQ9BYV8 [Medical]
TSGene95681
GENETestsCEP41
Target ValidationCEP41
Huge Navigator CEP41 [HugePedia]
snp3D : Map Gene to Disease95681
BioCentury BCIQCEP41
ClinGenCEP41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD95681
Chemical/Pharm GKB GenePA37039
Clinical trialCEP41
Miscellaneous
canSAR (ICR)CEP41 (select the gene name)
DataMed IndexCEP41
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCEP41
EVEXCEP41
GoPubMedCEP41
iHOPCEP41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:23:39 CEST 2019
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