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CERCAM (cerebral endothelial cell adhesion molecule)

Identity

Alias (NCBI)CEECAM1
GLT25D3
HGNC (Hugo) CERCAM
HGNC Alias symbGLT25D3
CerCAM
HGNC Alias nameglycosyltransferase 25 domain containing 3
HGNC Previous nameCEECAM1
HGNC Previous namecerebral cell adhesion molecule
LocusID (NCBI) 51148
Atlas_Id 61737
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 128420480 and ends at 128437351 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CERCAM (9q34.11) / CD3EAP (19q13.32)CERCAM (9q34.11) / CERCAM (9q34.11)CERCAM (9q34.11) / PPP1R9B (17q21.33)
CERCAM (9q34.11) / TNFRSF1A (12p13.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CERCAM   23723
Cards
Entrez_Gene (NCBI)CERCAM  51148  cerebral endothelial cell adhesion molecule
AliasesCEECAM1; GLT25D3
GeneCards (Weizmann)CERCAM
Ensembl hg19 (Hinxton)ENSG00000167123 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167123 [Gene_View]  ENSG00000167123 [Sequence]  chr9:128420480-128437351 [Contig_View]  CERCAM [Vega]
ICGC DataPortalENSG00000167123
TCGA cBioPortalCERCAM
AceView (NCBI)CERCAM
Genatlas (Paris)CERCAM
WikiGenes51148
SOURCE (Princeton)CERCAM
Genetics Home Reference (NIH)CERCAM
Genomic and cartography
GoldenPath hg38 (UCSC)CERCAM  -     chr9:128420480-128437351 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CERCAM  -     9q34.11   [Description]    (hg19-Feb_2009)
GoldenPathCERCAM - 9q34.11 [CytoView hg19]  CERCAM - 9q34.11 [CytoView hg38]
ImmunoBaseENSG00000167123
genome Data Viewer NCBICERCAM [Mapview hg19]  
OMIM616626   
Gene and transcription
Genbank (Entrez)AB040935 AF177203 AF218016 AK074519 AK074523
RefSeq transcript (Entrez)NM_001286760 NM_016174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CERCAM
Alternative Splicing GalleryENSG00000167123
Gene ExpressionCERCAM [ NCBI-GEO ]   CERCAM [ EBI - ARRAY_EXPRESS ]   CERCAM [ SEEK ]   CERCAM [ MEM ]
Gene Expression Viewer (FireBrowse)CERCAM [ Firebrowse - Broad ]
GenevisibleExpression of CERCAM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51148
GTEX Portal (Tissue expression)CERCAM
Human Protein AtlasENSG00000167123-CERCAM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4B2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4B2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4B2
Splice isoforms : SwissVarQ5T4B2
PhosPhoSitePlusQ5T4B2
Domaine pattern : Prosite (Expaxy)ER_TARGET (PS00014)   
Domains : Interpro (EBI)Glyco_trans_25    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_25 (PF01755)   
Domain families : Pfam (NCBI)pfam01755   
Conserved Domain (NCBI)CERCAM
DMDM Disease mutations51148
Blocks (Seattle)CERCAM
SuperfamilyQ5T4B2
Human Protein Atlas [tissue]ENSG00000167123-CERCAM [tissue]
Peptide AtlasQ5T4B2
HPRD16705
IPIIPI00295595   IPI00941005   IPI00642813   IPI00029994   IPI00647923   IPI00926119   IPI00924590   IPI00927917   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4B2
IntAct (EBI)Q5T4B2
FunCoupENSG00000167123
BioGRIDCERCAM
STRING (EMBL)CERCAM
ZODIACCERCAM
Ontologies - Pathways
QuickGOQ5T4B2
Ontology : AmiGOendoplasmic reticulum lumen  plasma membrane  cell adhesion  leukocyte cell-cell adhesion  procollagen galactosyltransferase activity  
Ontology : EGO-EBIendoplasmic reticulum lumen  plasma membrane  cell adhesion  leukocyte cell-cell adhesion  procollagen galactosyltransferase activity  
NDEx NetworkCERCAM
Atlas of Cancer Signalling NetworkCERCAM
Wikipedia pathwaysCERCAM
Orthology - Evolution
OrthoDB51148
GeneTree (enSembl)ENSG00000167123
Phylogenetic Trees/Animal Genes : TreeFamCERCAM
HOGENOMQ5T4B2
Homologs : HomoloGeneCERCAM
Homology/Alignments : Family Browser (UCSC)CERCAM
Gene fusions - Rearrangements
Fusion : QuiverCERCAM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCERCAM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CERCAM
dbVarCERCAM
ClinVarCERCAM
1000_GenomesCERCAM 
Exome Variant ServerCERCAM
GNOMAD BrowserENSG00000167123
Varsome BrowserCERCAM
Genetic variants : HAPMAP51148
Genomic Variants (DGV)CERCAM [DGVbeta]
DECIPHERCERCAM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCERCAM 
Mutations
ICGC Data PortalCERCAM 
TCGA Data PortalCERCAM 
Broad Tumor PortalCERCAM
OASIS PortalCERCAM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCERCAM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCERCAM
Mutations and Diseases : HGMDCERCAM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CERCAM
DgiDB (Drug Gene Interaction Database)CERCAM
DoCM (Curated mutations)CERCAM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CERCAM (select a term)
intoGenCERCAM
Cancer3DCERCAM(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616626   
Orphanet
DisGeNETCERCAM
MedgenCERCAM
Genetic Testing Registry CERCAM
NextProtQ5T4B2 [Medical]
TSGene51148
GENETestsCERCAM
Target ValidationCERCAM
Huge Navigator CERCAM [HugePedia]
snp3D : Map Gene to Disease51148
BioCentury BCIQCERCAM
ClinGenCERCAM
Clinical trials, drugs, therapy
Protein Interactions : CTD51148
Pharm GKB GenePA162382177
Clinical trialCERCAM
Miscellaneous
canSAR (ICR)CERCAM (select the gene name)
HarmonizomeCERCAM
DataMed IndexCERCAM
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCERCAM
EVEXCERCAM
GoPubMedCERCAM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:51:21 CEST 2020

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