Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CGNL1 (cingulin like 1)

Identity

Alias (NCBI)JACOP
PCING
HGNC (Hugo) CGNL1
HGNC Alias symbFLJ14957
JACOP
KIAA1749
PCING
HGNC Alias namejunction-associated coiled-coil protein
 paracingulin
LocusID (NCBI) 84952
Atlas_Id 61782
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 57376505 and ends at 57550727 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CGNL1 (15q21.3) / GPR173 (Xp11.22)CGNL1 (15q21.3) / HTN3 (4q13.3)CGNL1 (15q21.3) / TBC1D22A (22q13.31)
CGNL1 (15q21.3) / TCF12 (15q21.3)ENTPD6 (20p11.21) / CGNL1 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  CGNL1/TCF12 (15q21)

External links

Nomenclature
HGNC (Hugo)CGNL1   25931
Cards
Entrez_Gene (NCBI)CGNL1    cingulin like 1
AliasesJACOP; PCING
GeneCards (Weizmann)CGNL1
Ensembl hg19 (Hinxton)ENSG00000128849 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000128849 [Gene_View]  ENSG00000128849 [Sequence]  chr15:57376505-57550727 [Contig_View]  CGNL1 [Vega]
ICGC DataPortalENSG00000128849
TCGA cBioPortalCGNL1
AceView (NCBI)CGNL1
Genatlas (Paris)CGNL1
SOURCE (Princeton)CGNL1
Genetics Home Reference (NIH)CGNL1
Genomic and cartography
GoldenPath hg38 (UCSC)CGNL1  -     chr15:57376505-57550727 +  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CGNL1  -     15q21.3   [Description]    (hg19-Feb_2009)
GoldenPathCGNL1 - 15q21.3 [CytoView hg19]  CGNL1 - 15q21.3 [CytoView hg38]
ImmunoBaseENSG00000128849
genome Data Viewer NCBICGNL1 [Mapview hg19]  
OMIM607856   
Gene and transcription
Genbank (Entrez)AA661765 AB051536 AK027025 AK027863 AK056673
RefSeq transcript (Entrez)NM_001252335 NM_032866
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CGNL1
Alternative Splicing GalleryENSG00000128849
Gene ExpressionCGNL1 [ NCBI-GEO ]   CGNL1 [ EBI - ARRAY_EXPRESS ]   CGNL1 [ SEEK ]   CGNL1 [ MEM ]
Gene Expression Viewer (FireBrowse)CGNL1 [ Firebrowse - Broad ]
GenevisibleExpression of CGNL1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84952
GTEX Portal (Tissue expression)CGNL1
Human Protein AtlasENSG00000128849-CGNL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VF96   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VF96  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VF96
Splice isoforms : SwissVarQ0VF96
PhosPhoSitePlusQ0VF96
Domains : Interpro (EBI)Myosin_tail   
Domain families : Pfam (Sanger)Myosin_tail_1 (PF01576)   
Domain families : Pfam (NCBI)pfam01576   
Conserved Domain (NCBI)CGNL1
Blocks (Seattle)CGNL1
SuperfamilyQ0VF96
Human Protein Atlas [tissue]ENSG00000128849-CGNL1 [tissue]
Peptide AtlasQ0VF96
HPRD09708
IPIIPI00307829   IPI00877055   
Protein Interaction databases
DIP (DOE-UCLA)Q0VF96
IntAct (EBI)Q0VF96
BioGRIDCGNL1
STRING (EMBL)CGNL1
ZODIACCGNL1
Ontologies - Pathways
QuickGOQ0VF96
Ontology : AmiGOmotor activity  protein binding  bicellular tight junction  actin filament organization  myosin complex  negative regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBImotor activity  protein binding  bicellular tight junction  actin filament organization  myosin complex  negative regulation of small GTPase mediated signal transduction  
NDEx NetworkCGNL1
Atlas of Cancer Signalling NetworkCGNL1
Wikipedia pathwaysCGNL1
Orthology - Evolution
OrthoDB84952
GeneTree (enSembl)ENSG00000128849
Phylogenetic Trees/Animal Genes : TreeFamCGNL1
HOGENOMQ0VF96
Homologs : HomoloGeneCGNL1
Homology/Alignments : Family Browser (UCSC)CGNL1
Gene fusions - Rearrangements
Fusion : QuiverCGNL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCGNL1 [hg38]
dbVarCGNL1
ClinVarCGNL1
MonarchCGNL1
1000_GenomesCGNL1 
Exome Variant ServerCGNL1
GNOMAD BrowserENSG00000128849
Varsome BrowserCGNL1
Genomic Variants (DGV)CGNL1 [DGVbeta]
DECIPHERCGNL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCGNL1 
Mutations
ICGC Data PortalCGNL1 
TCGA Data PortalCGNL1 
Broad Tumor PortalCGNL1
OASIS PortalCGNL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCGNL1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCGNL1
Mutations and Diseases : HGMDCGNL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CGNL1
DgiDB (Drug Gene Interaction Database)CGNL1
DoCM (Curated mutations)CGNL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CGNL1 (select a term)
intoGenCGNL1
Cancer3DCGNL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607856   
Orphanet
DisGeNETCGNL1
MedgenCGNL1
Genetic Testing Registry CGNL1
NextProtQ0VF96 [Medical]
GENETestsCGNL1
Target ValidationCGNL1
Huge Navigator CGNL1 [HugePedia]
ClinGenCGNL1
Clinical trials, drugs, therapy
MyCancerGenomeCGNL1
Protein Interactions : CTD
Pharm GKB GenePA134972287
Clinical trialCGNL1
Miscellaneous
canSAR (ICR)CGNL1 (select the gene name)
HarmonizomeCGNL1
DataMed IndexCGNL1
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCGNL1
EVEXCGNL1
GoPubMedCGNL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 16:49:51 CET 2020
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