Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CHKB-DT (CHKB divergent transcript)

Identity

Other aliasCHKB-AS1
HGNC (Hugo) CHKB-DT
LocusID (NCBI) 100144603
Atlas_Id 80286
Location 22q13.33  [Link to chromosome band 22q13]
Location_base_pair Starts at 50583026 and ends at 50595281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CHKB-DT   40146
Cards
Entrez_Gene (NCBI)CHKB-DT  100144603  CHKB divergent transcript
AliasesCHKB-AS1
GeneCards (Weizmann)CHKB-DT
Ensembl hg19 (Hinxton)ENSG00000205559 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205559 [Gene_View]  ENSG00000205559 [Sequence]  chr22:50583026-50595281 [Contig_View]  CHKB-DT [Vega]
ICGC DataPortalENSG00000205559
TCGA cBioPortalCHKB-DT
AceView (NCBI)CHKB-DT
Genatlas (Paris)CHKB-DT
WikiGenes100144603
SOURCE (Princeton)CHKB-DT
Genetics Home Reference (NIH)CHKB-DT
Genomic and cartography
GoldenPath hg38 (UCSC)CHKB-DT  -     chr22:50583026-50595281 +  22q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CHKB-DT  -     22q13.33   [Description]    (hg19-Feb_2009)
GoldenPathCHKB-DT - 22q13.33 [CytoView hg19]  CHKB-DT - 22q13.33 [CytoView hg38]
ImmunoBaseENSG00000205559
Mapping of homologs : NCBICHKB-DT [Mapview hg19]  CHKB-DT [Mapview hg38]
Gene and transcription
Genbank (Entrez)BE393070 BI561134 BJ989458 CR456603 CR980518
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CHKB-DT
Cluster EST : UnigeneHs.657275 [ NCBI ]
CGAP (NCI)Hs.657275
Alternative Splicing GalleryENSG00000205559
Gene ExpressionCHKB-DT [ NCBI-GEO ]   CHKB-DT [ EBI - ARRAY_EXPRESS ]   CHKB-DT [ SEEK ]   CHKB-DT [ MEM ]
Gene Expression Viewer (FireBrowse)CHKB-DT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100144603
GTEX Portal (Tissue expression)CHKB-DT
Human Protein AtlasENSG00000205559-CHKB-DT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CHKB-DT
DMDM Disease mutations100144603
Blocks (Seattle)CHKB-DT
Human Protein Atlas [tissue]ENSG00000205559-CHKB-DT [tissue]
IPIIPI00447459   
Protein Interaction databases
FunCoupENSG00000205559
BioGRIDCHKB-DT
STRING (EMBL)CHKB-DT
ZODIACCHKB-DT
Ontologies - Pathways
Huge Navigator CHKB-DT [HugePedia]
snp3D : Map Gene to Disease100144603
BioCentury BCIQCHKB-DT
ClinGenCHKB-DT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100144603
Clinical trialCHKB-DT
Miscellaneous
canSAR (ICR)CHKB-DT (select the gene name)
DataMed IndexCHKB-DT
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCHKB-DT
EVEXCHKB-DT
GoPubMedCHKB-DT
iHOPCHKB-DT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:23:53 CEST 2019

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