Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CHPT1 (choline phosphotransferase 1)

Identity

Other namesCPT
CPT1
HGNC (Hugo) CHPT1
LocusID (NCBI) 56994
Location 12q23.2
Location_base_pair Starts at 102091417 and ends at 102122846 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CHPT1   17852
Entrez_Gene (NCBI)CHPT1  56994  choline phosphotransferase 1
Cards
GeneCards (Weizmann)CHPT1
Ensembl (Hinxton)ENSG00000111666 [Gene_View]  chr12:102091417-102122846 [Contig_View]  CHPT1 [Vega]
AceView (NCBI)CHPT1
Genatlas (Paris)CHPT1
SOURCE (Stanford)NM_020244
Genomic and cartography
GoldenPath (UCSC)CHPT1  -  12q23.2   chr12:102091417-102122846 +  12q23.2   [Description]    (hg19-Feb_2009)
EnsemblCHPT1 - 12q23.2 [CytoView]
Mapping of homologs : NCBICHPT1 [Mapview]
Gene and transcription
Genbank (Entrez)AF047431 AF111803 AF195623 AF195624 AK075211
RefSeq transcript (SRS)NM_020244
RefSeq transcript (Entrez)NM_020244
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838061 NW_004078075
Consensus coding sequences : CCDS (NCBI)CHPT1
Cluster EST : UnigeneHs.293077 [ SRS ] Hs.293077 [ NCBI ]
CGAP (NCI)Hs.293077
Alternative Splicing : Fast-db (Paris)GSHG0006941
Alternative Splicing GalleryENSG00000111666
Gene ExpressionCHPT1 [ NCBI-GEO ]   CHPT1 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WUD6 (SRS) Q8WUD6 (Uniprot)
NextProtQ8WUD6
With graphics : InterProQ8WUD6
Splice isoforms : SwissVarQ8WUD6(Swissvar)
Domaine pattern : Prosite (SRS)CDP_ALCOHOL_P_TRANSF (PS00379)   
Domaine pattern : Prosite (Expaxy)CDP_ALCOHOL_P_TRANSF (PS00379)   
Domains : Interpro (SRS)CDP-OH_P_trans    CHOPT   
Domains : Interpro (EBI)CDP-OH_P_trans    CHOPT   
Related proteins : CluSTrQ8WUD6
Domain families : Pfam (SRS)CDP-OH_P_transf (PF01066)   
Domain families : Pfam (Sanger)CDP-OH_P_transf (PF01066)   
Domain families : Pfam (NCBI)pfam01066   
DMDM56994
Blocks (Seattle)Q8WUD6
Human Protein AtlasENSG00000111666
HPRD13052
IPIIPI00329548   IPI00792004   IPI01015997   IPI01020740   IPI01021682   IPI01023026   IPI01020904   
Protein Interaction databases
DIP (DOE-UCLA)Q8WUD6
IntAct (EBI)Q8WUD6
FunCoupENSG00000111666
REACTOMECHPT1
Protein Interaction Database56994
BioGRIDCHPT1
InParanoidQ8WUD6
Interologous Interaction database Q8WUD6
IntegromeDBCHPT1
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CHPT1
SNP (GeneSNP Utah)CHPT1
SNP : HGBaseCHPT1
Genetic variants : HAPMAPCHPT1
Somatic Mutations in Cancer : COSMICCHPT1 
CONAN: Copy Number AnalysisCHPT1 
Mutations and Diseases : HGMDCHPT1
OMIM
GENETests
Disease Genetic AssociationCHPT1
Huge Navigator CHPT1 [HugePedia]  CHPT1 [HugeCancerGEM]
Genomic VariantsCHPT1  CHPT1 [DGVbeta]
snp3D : Map Gene to Disease56994
General knowledge
Homologs : HomoloGeneCHPT1
Homology/Alignments : Family Browser (UCSC)CHPT1
Phylogenetic Trees/Animal Genes : TreeFamCHPT1
Catalytic activity : Enzyme2.7.8.2 [ Enzyme-Expasy ]   2.7.8.2 [ Enzyme-SRS ]   2.7.8.2 [ IntEnz-EBI ]   2.7.8.2 [ BRENDA ]   2.7.8.2 [ KEGG ]   
Chemical/Protein Interactions : CTD56994
Chemical/Pharm GKB GenePA26477
Clinical trialCHPT1
Cancer Resource (Charite)ENSG00000111666
Ontology : AmiGOGolgi membrane  regulation of cell growth  diacylglycerol cholinephosphotransferase activity  diacylglycerol cholinephosphotransferase activity  lipid metabolic process  phospholipid metabolic process  phosphatidylcholine biosynthetic process  phosphatidylcholine biosynthetic process  CDP-choline pathway  platelet activating factor biosynthetic process  membrane  integral to membrane  diacylglycerol binding  intracellular membrane-bounded organelle  small molecule metabolic process  glycerophospholipid biosynthetic process  metal ion binding  
Ontology : EGO-EBIGolgi membrane  regulation of cell growth  diacylglycerol cholinephosphotransferase activity  diacylglycerol cholinephosphotransferase activity  lipid metabolic process  phospholipid metabolic process  phosphatidylcholine biosynthetic process  phosphatidylcholine biosynthetic process  CDP-choline pathway  platelet activating factor biosynthetic process  membrane  integral to membrane  diacylglycerol binding  intracellular membrane-bounded organelle  small molecule metabolic process  glycerophospholipid biosynthetic process  metal ion binding  
Pathways : KEGGGlycerophospholipid metabolismAminophosphonate metabolism
Other databases
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
PubGeneCHPT1
iHOPCHPT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:32:40 CEST 2013
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