Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CIAO2B (cytosolic iron-sulfur assembly component 2B)

Identity

Other aliasCGI-128
CIA2B
FAM96B
MIP18
HGNC (Hugo) CIAO2B
LocusID (NCBI) 51647
Atlas_Id 80624
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 66932055 and ends at 66934423 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CIAO2B   24261
Cards
Entrez_Gene (NCBI)CIAO2B  51647  cytosolic iron-sulfur assembly component 2B
AliasesCGI-128; CIA2B; FAM96B; MIP18
GeneCards (Weizmann)CIAO2B
Ensembl hg19 (Hinxton)ENSG00000166595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166595 [Gene_View]  ENSG00000166595 [Sequence]  chr16:66932055-66934423 [Contig_View]  CIAO2B [Vega]
ICGC DataPortalENSG00000166595
TCGA cBioPortalCIAO2B
AceView (NCBI)CIAO2B
Genatlas (Paris)CIAO2B
WikiGenes51647
SOURCE (Princeton)CIAO2B
Genetics Home Reference (NIH)CIAO2B
Genomic and cartography
GoldenPath hg38 (UCSC)CIAO2B  -     chr16:66932055-66934423 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIAO2B  -     16q22.1   [Description]    (hg19-Feb_2009)
GoldenPathCIAO2B - 16q22.1 [CytoView hg19]  CIAO2B - 16q22.1 [CytoView hg38]
ImmunoBaseENSG00000166595
genome Data Viewer NCBICIAO2B [Mapview hg19]  
OMIM614778   
Gene and transcription
Genbank (Entrez)AF151886 AF161467 BC001733 BC005023 BI598300
RefSeq transcript (Entrez)NM_016062
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIAO2B
Alternative Splicing GalleryENSG00000166595
Gene ExpressionCIAO2B [ NCBI-GEO ]   CIAO2B [ EBI - ARRAY_EXPRESS ]   CIAO2B [ SEEK ]   CIAO2B [ MEM ]
Gene Expression Viewer (FireBrowse)CIAO2B [ Firebrowse - Broad ]
GenevisibleExpression of CIAO2B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51647
GTEX Portal (Tissue expression)CIAO2B
Human Protein AtlasENSG00000166595-CIAO2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y3D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y3D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y3D0
Splice isoforms : SwissVarQ9Y3D0
PhosPhoSitePlusQ9Y3D0
Domains : Interpro (EBI)FSCA_dom_sf    MIP18    MIP18-like   
Domain families : Pfam (Sanger)FeS_assembly_P (PF01883)   
Domain families : Pfam (NCBI)pfam01883   
Conserved Domain (NCBI)CIAO2B
DMDM Disease mutations51647
Blocks (Seattle)CIAO2B
SuperfamilyQ9Y3D0
Human Protein Atlas [tissue]ENSG00000166595-CIAO2B [tissue]
Peptide AtlasQ9Y3D0
IPIIPI00007024   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y3D0
IntAct (EBI)Q9Y3D0
FunCoupENSG00000166595
BioGRIDCIAO2B
STRING (EMBL)CIAO2B
ZODIACCIAO2B
Ontologies - Pathways
QuickGOQ9Y3D0
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  cytoplasm  spindle  cytosol  chromosome segregation  iron-sulfur cluster assembly  iron-sulfur cluster assembly  MMXD complex  CIA complex  CIA complex  protein maturation by iron-sulfur cluster transfer  protein maturation by [4Fe-4S] cluster transfer  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  cytoplasm  spindle  cytosol  chromosome segregation  iron-sulfur cluster assembly  iron-sulfur cluster assembly  MMXD complex  CIA complex  CIA complex  protein maturation by iron-sulfur cluster transfer  protein maturation by [4Fe-4S] cluster transfer  
NDEx NetworkCIAO2B
Atlas of Cancer Signalling NetworkCIAO2B
Wikipedia pathwaysCIAO2B
Orthology - Evolution
OrthoDB51647
GeneTree (enSembl)ENSG00000166595
Phylogenetic Trees/Animal Genes : TreeFamCIAO2B
HOGENOMQ9Y3D0
Homologs : HomoloGeneCIAO2B
Homology/Alignments : Family Browser (UCSC)CIAO2B
Gene fusions - Rearrangements
Fusion : QuiverCIAO2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIAO2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIAO2B
dbVarCIAO2B
ClinVarCIAO2B
1000_GenomesCIAO2B 
Exome Variant ServerCIAO2B
GNOMAD BrowserENSG00000166595
Varsome BrowserCIAO2B
Genetic variants : HAPMAP51647
Genomic Variants (DGV)CIAO2B [DGVbeta]
DECIPHERCIAO2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIAO2B 
Mutations
ICGC Data PortalCIAO2B 
TCGA Data PortalCIAO2B 
Broad Tumor PortalCIAO2B
OASIS PortalCIAO2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCIAO2B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCIAO2B
Mutations and Diseases : HGMDCIAO2B
BioMutasearch CIAO2B
DgiDB (Drug Gene Interaction Database)CIAO2B
DoCM (Curated mutations)CIAO2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIAO2B (select a term)
intoGenCIAO2B
Cancer3DCIAO2B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614778   
Orphanet
DisGeNETCIAO2B
MedgenCIAO2B
Genetic Testing Registry CIAO2B
NextProtQ9Y3D0 [Medical]
TSGene51647
GENETestsCIAO2B
Target ValidationCIAO2B
Huge Navigator CIAO2B [HugePedia]
snp3D : Map Gene to Disease51647
BioCentury BCIQCIAO2B
ClinGenCIAO2B
Clinical trials, drugs, therapy
Protein Interactions : CTD51647
Pharm GKB GenePA142671830
Clinical trialCIAO2B
Miscellaneous
canSAR (ICR)CIAO2B (select the gene name)
HarmonizomeCIAO2B
DataMed IndexCIAO2B
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIAO2B
EVEXCIAO2B
GoPubMedCIAO2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 19:58:19 CEST 2020

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