Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CIAO3 (cytosolic iron-sulfur assembly component 3)

Identity

Other aliasHPRN
IOP1
LET1L
NAR1
NARFL
PRN
HGNC (Hugo) CIAO3
LocusID (NCBI) 64428
Atlas_Id 80617
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 729755 and ends at 741038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CIAO3   14179
Cards
Entrez_Gene (NCBI)CIAO3  64428  cytosolic iron-sulfur assembly component 3
AliasesHPRN; IOP1; LET1L; NAR1; 
NARFL; PRN
GeneCards (Weizmann)CIAO3
Ensembl hg19 (Hinxton)ENSG00000103245 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103245 [Gene_View]  ENSG00000103245 [Sequence]  chr16:729755-741038 [Contig_View]  CIAO3 [Vega]
ICGC DataPortalENSG00000103245
TCGA cBioPortalCIAO3
AceView (NCBI)CIAO3
Genatlas (Paris)CIAO3
WikiGenes64428
SOURCE (Princeton)CIAO3
Genetics Home Reference (NIH)CIAO3
Genomic and cartography
GoldenPath hg38 (UCSC)CIAO3  -     chr16:729755-741038 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CIAO3  -     16p13.3   [Description]    (hg19-Feb_2009)
GoldenPathCIAO3 - 16p13.3 [CytoView hg19]  CIAO3 - 16p13.3 [CytoView hg38]
ImmunoBaseENSG00000103245
Mapping of homologs : NCBICIAO3 [Mapview hg19]  CIAO3 [Mapview hg38]
OMIM611118   
Gene and transcription
Genbank (Entrez)AK025641 AK025861 AK056467 AK094812 AK095675
RefSeq transcript (Entrez)NM_001304799 NM_022493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CIAO3
Cluster EST : UnigeneHs.513247 [ NCBI ]
CGAP (NCI)Hs.513247
Alternative Splicing GalleryENSG00000103245
Gene ExpressionCIAO3 [ NCBI-GEO ]   CIAO3 [ EBI - ARRAY_EXPRESS ]   CIAO3 [ SEEK ]   CIAO3 [ MEM ]
Gene Expression Viewer (FireBrowse)CIAO3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64428
GTEX Portal (Tissue expression)CIAO3
Human Protein AtlasENSG00000103245-CIAO3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6Q4
Splice isoforms : SwissVarQ9H6Q4
PhosPhoSitePlusQ9H6Q4
Domains : Interpro (EBI)Fe_hydrogenase    Fe_hydrogenase_lsu_C    Fe_hydrogenase_ssu   
Domain families : Pfam (Sanger)Fe_hyd_lg_C (PF02906)    Fe_hyd_SSU (PF02256)   
Domain families : Pfam (NCBI)pfam02906    pfam02256   
Domain families : Smart (EMBL)Fe_hyd_SSU (SM00902)  
Conserved Domain (NCBI)CIAO3
DMDM Disease mutations64428
Blocks (Seattle)CIAO3
SuperfamilyQ9H6Q4
Human Protein Atlas [tissue]ENSG00000103245-CIAO3 [tissue]
Peptide AtlasQ9H6Q4
IPIIPI00008348   IPI00847883   IPI00645749   IPI00909439   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6Q4
IntAct (EBI)Q9H6Q4
FunCoupENSG00000103245
BioGRIDCIAO3
STRING (EMBL)CIAO3
ZODIACCIAO3
Ontologies - Pathways
QuickGOQ9H6Q4
Ontology : AmiGOresponse to hypoxia  hematopoietic progenitor cell differentiation  protein binding  regulation of gene expression  iron-sulfur cluster assembly  iron-sulfur cluster assembly  oxygen homeostasis  metal ion binding  4 iron, 4 sulfur cluster binding  CIA complex  CIA complex  
Ontology : EGO-EBIresponse to hypoxia  hematopoietic progenitor cell differentiation  protein binding  regulation of gene expression  iron-sulfur cluster assembly  iron-sulfur cluster assembly  oxygen homeostasis  metal ion binding  4 iron, 4 sulfur cluster binding  CIA complex  CIA complex  
NDEx NetworkCIAO3
Atlas of Cancer Signalling NetworkCIAO3
Wikipedia pathwaysCIAO3
Orthology - Evolution
OrthoDB64428
GeneTree (enSembl)ENSG00000103245
Phylogenetic Trees/Animal Genes : TreeFamCIAO3
HOGENOMQ9H6Q4
Homologs : HomoloGeneCIAO3
Homology/Alignments : Family Browser (UCSC)CIAO3
Gene fusions - Rearrangements
Fusion : QuiverCIAO3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCIAO3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CIAO3
dbVarCIAO3
ClinVarCIAO3
1000_GenomesCIAO3 
Exome Variant ServerCIAO3
ExAC (Exome Aggregation Consortium)ENSG00000103245
GNOMAD BrowserENSG00000103245
Varsome BrowserCIAO3
Genetic variants : HAPMAP64428
Genomic Variants (DGV)CIAO3 [DGVbeta]
DECIPHERCIAO3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCIAO3 
Mutations
ICGC Data PortalCIAO3 
TCGA Data PortalCIAO3 
Broad Tumor PortalCIAO3
OASIS PortalCIAO3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCIAO3
BioMutasearch CIAO3
DgiDB (Drug Gene Interaction Database)CIAO3
DoCM (Curated mutations)CIAO3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CIAO3 (select a term)
intoGenCIAO3
Cancer3DCIAO3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611118   
Orphanet
DisGeNETCIAO3
MedgenCIAO3
Genetic Testing Registry CIAO3
NextProtQ9H6Q4 [Medical]
TSGene64428
GENETestsCIAO3
Target ValidationCIAO3
Huge Navigator CIAO3 [HugePedia]
snp3D : Map Gene to Disease64428
BioCentury BCIQCIAO3
ClinGenCIAO3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64428
Chemical/Pharm GKB GenePA128394707
Clinical trialCIAO3
Miscellaneous
canSAR (ICR)CIAO3 (select the gene name)
DataMed IndexCIAO3
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCIAO3
EVEXCIAO3
GoPubMedCIAO3
iHOPCIAO3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:23:57 CEST 2019

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