Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CLDN5 (claudin 5)

Identity

Other namesAWAL
BEC1
CPETRL1
TMVCF
HGNC (Hugo) CLDN5
LocusID (NCBI) 7122
Location 22q11.21
Location_base_pair Starts at 19510547 and ends at 19512860 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CLDN5   2047
Entrez_Gene (NCBI)CLDN5  7122  claudin 5
Cards
GeneCards (Weizmann)CLDN5
Ensembl (Hinxton)ENSG00000184113 [Gene_View]  chr22:19510547-19512860 [Contig_View]  CLDN5 [Vega]
AceView (NCBI)CLDN5
Genatlas (Paris)CLDN5
SOURCE (Stanford)NM_001130861 NM_003277
Genomic and cartography
GoldenPath (UCSC)CLDN5  -  22q11.21   chr22:19510547-19512860 -  22q11.21   [Description]    (hg19-Feb_2009)
EnsemblCLDN5 - 22q11.21 [CytoView]
Mapping of homologs : NCBICLDN5 [Mapview]
OMIM602101   
Gene and transcription
Genbank (Entrez)AF000959 AK092561 AK124019 AK222466 BC002404
RefSeq transcript (SRS)NM_001130861 NM_003277
RefSeq transcript (Entrez)NM_001130861 NM_003277
RefSeq genomic (SRS)AC_000154 NC_000022 NC_018933 NT_011519 NW_001838737 NW_004078111
RefSeq genomic (Entrez)AC_000154 NC_000022 NC_018933 NT_011519 NW_001838737 NW_004078111
Consensus coding sequences : CCDS (NCBI)CLDN5
Cluster EST : UnigeneHs.505337 [ SRS ] Hs.505337 [ NCBI ]
CGAP (NCI)Hs.505337
Alternative Splicing : Fast-db (Paris)GSHG0020188
Alternative Splicing GalleryENSG00000184113
Gene ExpressionCLDN5 [ NCBI-GEO ]   CLDN5 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00501 (SRS) O00501 (Uniprot)
NextProtO00501
With graphics : InterProO00501
Splice isoforms : SwissVarO00501(Swissvar)
Domaine pattern : Prosite (SRS)CLAUDIN (PS01346)   
Domaine pattern : Prosite (Expaxy)CLAUDIN (PS01346)   
Domains : Interpro (SRS)Claudin    Claudin5    Claudin_CS    PMP22/EMP/MP20/Claudin   
Domains : Interpro (EBI)Claudin    Claudin5    Claudin_CS    PMP22/EMP/MP20/Claudin   
Related proteins : CluSTrO00501
Domain families : Pfam (SRS)PMP22_Claudin (PF00822)   
Domain families : Pfam (Sanger)PMP22_Claudin (PF00822)   
Domain families : Pfam (NCBI)pfam00822   
DMDM7122
Blocks (Seattle)O00501
Human Protein AtlasENSG00000184113
HPRD03654
IPIIPI00012089   
Protein Interaction databases
DIP (DOE-UCLA)O00501
IntAct (EBI)O00501
FunCoupENSG00000184113
REACTOMECLDN5
Protein Interaction Database7122
BioGRIDCLDN5
InParanoidO00501
Interologous Interaction database O00501
IntegromeDBCLDN5
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CLDN5
SNP (GeneSNP Utah)CLDN5
SNP : HGBaseCLDN5
Genetic variants : HAPMAPCLDN5
Somatic Mutations in Cancer : COSMICCLDN5 
CONAN: Copy Number AnalysisCLDN5 
Mutations and Diseases : HGMDCLDN5
OMIM602101   
GENETests602101   
Disease Genetic AssociationCLDN5
Huge Navigator CLDN5 [HugePedia]  CLDN5 [HugeCancerGEM]
Genomic VariantsCLDN5  CLDN5 [DGVbeta]
ClinVarCLDN5
snp3D : Map Gene to Disease7122
General knowledge
Homologs : HomoloGeneCLDN5
Homology/Alignments : Family Browser (UCSC)CLDN5
Phylogenetic Trees/Animal Genes : TreeFamCLDN5
Chemical/Protein Interactions : CTD7122
Chemical/Pharm GKB GenePA26573
Clinical trialCLDN5
Cancer Resource (Charite)ENSG00000184113
Ontology : AmiGOstructural molecule activity  plasma membrane  cell-cell junction  tight junction  integral to membrane  calcium-independent cell-cell adhesion  paranode region of axon  myelination  identical protein binding  Schmidt-Lanterman incisure  
Ontology : EGO-EBIstructural molecule activity  plasma membrane  cell-cell junction  tight junction  integral to membrane  calcium-independent cell-cell adhesion  paranode region of axon  myelination  identical protein binding  Schmidt-Lanterman incisure  
Pathways : KEGGTight junctionCell adhesion molecules (CAMs)Leukocyte transendothelial migration
Other databases
Probes
Litterature
PubMed72 Pubmed reference(s) in Entrez
PubGeneCLDN5
iHOPCLDN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 18:00:20 CEST 2013
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