COLCA2 (colorectal cancer associated 2)

2013-09-01  

Identity

HGNC
COLCA2
LOCATION
11q23.1
LOCUSID
120376
ALIAS
C11orf93,CASC13,LOH11CR1G
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 120376
MIM: 615694
HGNC: 26978
Ensembl: ENSG00000214290

Variants:

dbSNP: 120376
ClinVar: 120376
TCGA: ENSG00000214290
COSMIC: COLCA2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000214290ENST00000398035A8K830
ENSG00000214290ENST00000526216A8K830
ENSG00000214290ENST00000528846A0A0A0MTE5
ENSG00000214290ENST00000610738A8K830
ENSG00000214290ENST00000614153A8K830
ENSG00000214290ENST00000638573A8K830
ENSG00000214290ENST00000639470A0A1W2PQW7

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

References

Pubmed IDYearTitleCitations
192400612009Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling.75
210715392011Generalizability and epidemiologic characterization of eleven colorectal cancer GWAS hits in multiple populations.39
187531462008Refinement of the basis and impact of common 11q23.1 variation to the risk of developing colorectal cancer.32
241549732014Identification of genes expressed by immune cells of the colon that are regulated by colorectal cancer-associated variants.15
241462762014Genetic association of PLCE1, C11orf92-C11orf93, and NOC3L with colorectal cancer risk in the Han population.11

Citation

Dessen P

COLCA2 (colorectal cancer associated 2)

Atlas Genet Cytogenet Oncol Haematol. 2013-09-01

Online version: http://atlasgeneticsoncology.org/gene/53526/colca2