Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CSKMT (citrate synthase lysine methyltransferase)

Identity

Other aliasCS-KMT
METTL12
U99HG
HGNC (Hugo) CSKMT
LocusID (NCBI) 751071
Atlas_Id 80392
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62665307 and ends at 62667451 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CSKMT   33113
Cards
Entrez_Gene (NCBI)CSKMT  751071  citrate synthase lysine methyltransferase
AliasesCS-KMT; METTL12; U99HG
GeneCards (Weizmann)CSKMT
Ensembl hg19 (Hinxton)ENSG00000214756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214756 [Gene_View]  ENSG00000214756 [Sequence]  chr11:62665307-62667451 [Contig_View]  CSKMT [Vega]
ICGC DataPortalENSG00000214756
TCGA cBioPortalCSKMT
AceView (NCBI)CSKMT
Genatlas (Paris)CSKMT
WikiGenes751071
SOURCE (Princeton)CSKMT
Genetics Home Reference (NIH)CSKMT
Genomic and cartography
GoldenPath hg38 (UCSC)CSKMT  -     chr11:62665307-62667451 +  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSKMT  -     11q12.3   [Description]    (hg19-Feb_2009)
GoldenPathCSKMT - 11q12.3 [CytoView hg19]  CSKMT - 11q12.3 [CytoView hg38]
ImmunoBaseENSG00000214756
Mapping of homologs : NCBICSKMT [Mapview hg19]  CSKMT [Mapview hg38]
OMIM617897   
Gene and transcription
Genbank (Entrez)AK297138 BC041359 BC147001 BC147011 BC171895
RefSeq transcript (Entrez)NM_001043229
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSKMT
Cluster EST : UnigeneHs.640726 [ NCBI ]
CGAP (NCI)Hs.640726
Alternative Splicing GalleryENSG00000214756
Gene ExpressionCSKMT [ NCBI-GEO ]   CSKMT [ EBI - ARRAY_EXPRESS ]   CSKMT [ SEEK ]   CSKMT [ MEM ]
Gene Expression Viewer (FireBrowse)CSKMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)751071
GTEX Portal (Tissue expression)CSKMT
Human Protein AtlasENSG00000214756-CSKMT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CSKMT
DMDM Disease mutations751071
Blocks (Seattle)CSKMT
Human Protein Atlas [tissue]ENSG00000214756-CSKMT [tissue]
IPIIPI00785058   
Protein Interaction databases
FunCoupENSG00000214756
BioGRIDCSKMT
STRING (EMBL)CSKMT
ZODIACCSKMT
Ontologies - Pathways
Huge Navigator CSKMT [HugePedia]
snp3D : Map Gene to Disease751071
BioCentury BCIQCSKMT
ClinGenCSKMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD751071
Chemical/Pharm GKB GenePA164722245
Clinical trialCSKMT
Miscellaneous
canSAR (ICR)CSKMT (select the gene name)
DataMed IndexCSKMT
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSKMT
EVEXCSKMT
GoPubMedCSKMT
iHOPCSKMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:24:42 CEST 2019

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