Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CSRP1 (cysteine and glycine rich protein 1)

Identity

Alias_namesCYRP
Alias_symbol (synonym)CSRP
D1S181E
Other aliasCRP
CRP1
HEL-141
HEL-S-286
HGNC (Hugo) CSRP1
LocusID (NCBI) 1465
Atlas_Id 47550
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201483530 and ends at 201507259 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CSRP1 (1q32.1) / CD9 (12p13.31)CSRP1 (1q32.1) / CSRP1 (1q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CSRP1   2469
Cards
Entrez_Gene (NCBI)CSRP1  1465  cysteine and glycine rich protein 1
AliasesCRP; CRP1; CSRP; CYRP; 
D1S181E; HEL-141; HEL-S-286
GeneCards (Weizmann)CSRP1
Ensembl hg19 (Hinxton)ENSG00000159176 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159176 [Gene_View]  ENSG00000159176 [Sequence]  chr1:201483530-201507259 [Contig_View]  CSRP1 [Vega]
ICGC DataPortalENSG00000159176
TCGA cBioPortalCSRP1
AceView (NCBI)CSRP1
Genatlas (Paris)CSRP1
WikiGenes1465
SOURCE (Princeton)CSRP1
Genetics Home Reference (NIH)CSRP1
Genomic and cartography
GoldenPath hg38 (UCSC)CSRP1  -     chr1:201483530-201507259 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CSRP1  -     1q32.1   [Description]    (hg19-Feb_2009)
GoldenPathCSRP1 - 1q32.1 [CytoView hg19]  CSRP1 - 1q32.1 [CytoView hg38]
ImmunoBaseENSG00000159176
Mapping of homologs : NCBICSRP1 [Mapview hg19]  CSRP1 [Mapview hg38]
OMIM123876   
Gene and transcription
Genbank (Entrez)AB209756 AK057876 AK122812 AK126445 AK126507
RefSeq transcript (Entrez)NM_001144773 NM_001193570 NM_001193571 NM_001193572 NM_004078
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CSRP1
Cluster EST : UnigeneHs.108080 [ NCBI ]
CGAP (NCI)Hs.108080
Alternative Splicing GalleryENSG00000159176
Gene ExpressionCSRP1 [ NCBI-GEO ]   CSRP1 [ EBI - ARRAY_EXPRESS ]   CSRP1 [ SEEK ]   CSRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)CSRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1465
GTEX Portal (Tissue expression)CSRP1
Human Protein AtlasENSG00000159176-CSRP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21291   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP21291  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP21291
Splice isoforms : SwissVarP21291
PhosPhoSitePlusP21291
Domaine pattern : Prosite (Expaxy)LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)Znf_LIM   
Domain families : Pfam (Sanger)LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00412   
Domain families : Smart (EMBL)LIM (SM00132)  
Conserved Domain (NCBI)CSRP1
DMDM Disease mutations1465
Blocks (Seattle)CSRP1
SuperfamilyP21291
Human Protein Atlas [tissue]ENSG00000159176-CSRP1 [tissue]
Peptide AtlasP21291
HPRD00470
IPIIPI00442073   IPI00978767   IPI00979856   IPI00976060   
Protein Interaction databases
DIP (DOE-UCLA)P21291
IntAct (EBI)P21291
FunCoupENSG00000159176
BioGRIDCSRP1
STRING (EMBL)CSRP1
ZODIACCSRP1
Ontologies - Pathways
QuickGOP21291
Ontology : AmiGORNA binding  nucleus  nucleus  cytoplasm  focal adhesion  zinc ion binding  structural constituent of muscle  Z disc  actin cytoskeleton organization  actinin binding  sarcomere organization  muscle tissue development  extracellular exosome  platelet aggregation  
Ontology : EGO-EBIRNA binding  nucleus  nucleus  cytoplasm  focal adhesion  zinc ion binding  structural constituent of muscle  Z disc  actin cytoskeleton organization  actinin binding  sarcomere organization  muscle tissue development  extracellular exosome  platelet aggregation  
NDEx NetworkCSRP1
Atlas of Cancer Signalling NetworkCSRP1
Wikipedia pathwaysCSRP1
Orthology - Evolution
OrthoDB1465
GeneTree (enSembl)ENSG00000159176
Phylogenetic Trees/Animal Genes : TreeFamCSRP1
HOGENOMP21291
Homologs : HomoloGeneCSRP1
Homology/Alignments : Family Browser (UCSC)CSRP1
Gene fusions - Rearrangements
Fusion : QuiverCSRP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCSRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CSRP1
dbVarCSRP1
ClinVarCSRP1
1000_GenomesCSRP1 
Exome Variant ServerCSRP1
ExAC (Exome Aggregation Consortium)ENSG00000159176
GNOMAD BrowserENSG00000159176
Varsome BrowserCSRP1
Genetic variants : HAPMAP1465
Genomic Variants (DGV)CSRP1 [DGVbeta]
DECIPHERCSRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCSRP1 
Mutations
ICGC Data PortalCSRP1 
TCGA Data PortalCSRP1 
Broad Tumor PortalCSRP1
OASIS PortalCSRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCSRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCSRP1
Mutations and Diseases : HGMDCSRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CSRP1
DgiDB (Drug Gene Interaction Database)CSRP1
DoCM (Curated mutations)CSRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CSRP1 (select a term)
intoGenCSRP1
Cancer3DCSRP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM123876   
Orphanet
DisGeNETCSRP1
MedgenCSRP1
Genetic Testing Registry CSRP1
NextProtP21291 [Medical]
TSGene1465
GENETestsCSRP1
Target ValidationCSRP1
Huge Navigator CSRP1 [HugePedia]
snp3D : Map Gene to Disease1465
BioCentury BCIQCSRP1
ClinGenCSRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1465
Chemical/Pharm GKB GenePA26967
Clinical trialCSRP1
Miscellaneous
canSAR (ICR)CSRP1 (select the gene name)
DataMed IndexCSRP1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCSRP1
EVEXCSRP1
GoPubMedCSRP1
iHOPCSRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:38:56 CET 2019
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