Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXCL14 (chemokine (C-X-C motif) ligand 14)

Identity

Other namesBMAC
BRAK
KEC
KS1
MIP-2g
MIP2G
NJAC
SCYB14
HGNC (Hugo) CXCL14
LocusID (NCBI) 9547
Location 5q31.1
Location_base_pair Starts at 134906371 and ends at 134914969 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXCL14   10640
Cards
Entrez_Gene (NCBI)CXCL14  9547  chemokine (C-X-C motif) ligand 14
GeneCards (Weizmann)CXCL14
Ensembl (Hinxton)ENSG00000145824 [Gene_View]  chr5:134906371-134914969 [Contig_View]  CXCL14 [Vega]
ICGC DataPortalENSG00000145824
cBioPortalCXCL14
AceView (NCBI)CXCL14
Genatlas (Paris)CXCL14
WikiGenes9547
SOURCE (Princeton)NM_004887
Genomic and cartography
GoldenPath (UCSC)CXCL14  -  5q31.1   chr5:134906371-134914969 -  5q31.1   [Description]    (hg19-Feb_2009)
EnsemblCXCL14 - 5q31.1 [CytoView]
Mapping of homologs : NCBICXCL14 [Mapview]
OMIM604186   
Gene and transcription
Genbank (Entrez)AB543622 AF073957 AF086340 AF106911 AF144103
RefSeq transcript (Entrez)NM_004887
RefSeq genomic (Entrez)AC_000137 NC_000005 NC_018916 NT_034772 NW_001838952 NW_004929323
Consensus coding sequences : CCDS (NCBI)CXCL14
Cluster EST : UnigeneHs.483444 [ NCBI ]
CGAP (NCI)Hs.483444
Alternative Splicing : Fast-db (Paris)GSHG0025080
Alternative Splicing GalleryENSG00000145824
Gene ExpressionCXCL14 [ NCBI-GEO ]     CXCL14 [ SEEK ]   CXCL14 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95715 (Uniprot)
NextProtO95715  [Medical]
With graphics : InterProO95715
Splice isoforms : SwissVarO95715 (Swissvar)
Domains : Interpro (EBI)Chemokine_IL8-like_dom [organisation]  
Related proteins : CluSTrO95715
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
DMDM Disease mutations9547
Blocks (Seattle)O95715
PDB (SRS)2HDL   
PDB (PDBSum)2HDL   
PDB (IMB)2HDL   
PDB (RSDB)2HDL   
Human Protein AtlasENSG00000145824 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO95715
HPRD16049
IPIIPI00396257   
Protein Interaction databases
DIP (DOE-UCLA)O95715
IntAct (EBI)O95715
FunCoupENSG00000145824
BioGRIDCXCL14
InParanoidO95715
Interologous Interaction database O95715
IntegromeDBCXCL14
STRING (EMBL)CXCL14
Ontologies - Pathways
Ontology : AmiGOextracellular space  Golgi apparatus  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  inner ear development  cell chemotaxis  cell chemotaxis  
Ontology : EGO-EBIextracellular space  Golgi apparatus  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  inner ear development  cell chemotaxis  cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
Protein Interaction DatabaseCXCL14
Wikipedia pathwaysCXCL14
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CXCL14
snp3D : Map Gene to Disease9547
SNP (GeneSNP Utah)CXCL14
SNP : HGBaseCXCL14
Genetic variants : HAPMAPCXCL14
Exome VariantCXCL14
1000_GenomesCXCL14 
ICGC programENSG00000145824 
Somatic Mutations in Cancer : COSMICCXCL14 
CONAN: Copy Number AnalysisCXCL14 
Mutations and Diseases : HGMDCXCL14
Genomic VariantsCXCL14  CXCL14 [DGVbeta]
dbVarCXCL14
ClinVarCXCL14
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM604186   
MedgenCXCL14
GENETestsCXCL14
Disease Genetic AssociationCXCL14
Huge Navigator CXCL14 [HugePedia]  CXCL14 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCXCL14
Homology/Alignments : Family Browser (UCSC)CXCL14
Phylogenetic Trees/Animal Genes : TreeFamCXCL14
Chemical/Protein Interactions : CTD9547
Chemical/Pharm GKB GenePA35571
Clinical trialCXCL14
Cancer Resource (Charite)ENSG00000145824
Other databases
Probes
Litterature
PubMed61 Pubmed reference(s) in Entrez
CoreMineCXCL14
iHOPCXCL14
OncoSearchCXCL14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:28:55 CEST 2014

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