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CXCL14 (C-X-C motif chemokine ligand 14)

Identity

Other namesBMAC
BRAK
KEC
KS1
MIP-2g
MIP2G
NJAC
SCYB14
HGNC (Hugo) CXCL14
LocusID (NCBI) 9547
Atlas_Id 46220
Location 5q31.1
Location_base_pair Starts at 134906371 and ends at 134914969 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CXCL14 (5q31.1) / CSAD (12q13.13)CXCL14 (5q31.1) / CXCL14 (5q31.1)CXCL14 (5q31.1) / DCAF16 (4p15.31)
DCAF16 (4p15.31) / CXCL14 (5q31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXCL14   10640
Cards
Entrez_Gene (NCBI)CXCL14  9547  C-X-C motif chemokine ligand 14
AliasesBMAC; BRAK; KEC; KS1; 
MIP-2g; MIP2G; NJAC; SCYB14
GeneCards (Weizmann)CXCL14
Ensembl hg19 (Hinxton)ENSG00000145824 [Gene_View]  chr5:134906371-134914969 [Contig_View]  CXCL14 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145824 [Gene_View]  chr5:134906371-134914969 [Contig_View]  CXCL14 [Vega]
ICGC DataPortalENSG00000145824
TCGA cBioPortalCXCL14
AceView (NCBI)CXCL14
Genatlas (Paris)CXCL14
WikiGenes9547
SOURCE (Princeton)CXCL14
Genomic and cartography
GoldenPath hg19 (UCSC)CXCL14  -     chr5:134906371-134914969 -  5q31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CXCL14  -     5q31.1   [Description]    (hg38-Dec_2013)
EnsemblCXCL14 - 5q31.1 [CytoView hg19]  CXCL14 - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBICXCL14 [Mapview hg19]  CXCL14 [Mapview hg38]
OMIM604186   
Gene and transcription
Genbank (Entrez)AB543622 AF073957 AF086340 AF106911 AF144103
RefSeq transcript (Entrez)NM_004887
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)CXCL14
Cluster EST : UnigeneHs.483444 [ NCBI ]
CGAP (NCI)Hs.483444
Alternative Splicing GalleryENSG00000145824
Gene ExpressionCXCL14 [ NCBI-GEO ]   CXCL14 [ EBI - ARRAY_EXPRESS ]   CXCL14 [ SEEK ]   CXCL14 [ MEM ]
Gene Expression Viewer (FireBrowse)CXCL14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9547
GTEX Portal (Tissue expression)CXCL14
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95715 (Uniprot)
NextProtO95715  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95715
Splice isoforms : SwissVarO95715 (Swissvar)
PhosPhoSitePlusO95715
Domains : Interpro (EBI)Chemokine_IL8-like_dom   
Domain families : Pfam (Sanger)IL8 (PF00048)   
Domain families : Pfam (NCBI)pfam00048   
DMDM Disease mutations9547
Blocks (Seattle)CXCL14
PDB (SRS)2HDL   
PDB (PDBSum)2HDL   
PDB (IMB)2HDL   
PDB (RSDB)2HDL   
Structural Biology KnowledgeBase2HDL   
SCOP (Structural Classification of Proteins)2HDL   
CATH (Classification of proteins structures)2HDL   
SuperfamilyO95715
Human Protein AtlasENSG00000145824
Peptide AtlasO95715
HPRD16049
IPIIPI00396257   
Protein Interaction databases
DIP (DOE-UCLA)O95715
IntAct (EBI)O95715
FunCoupENSG00000145824
BioGRIDCXCL14
STRING (EMBL)CXCL14
ZODIACCXCL14
Ontologies - Pathways
QuickGOO95715
Ontology : AmiGOprotein binding  extracellular space  Golgi apparatus  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  negative regulation of myoblast differentiation  inner ear development  cell chemotaxis  cell chemotaxis  positive regulation of natural killer cell chemotaxis  
Ontology : EGO-EBIprotein binding  extracellular space  Golgi apparatus  chemotaxis  immune response  signal transduction  cell-cell signaling  chemokine activity  negative regulation of myoblast differentiation  inner ear development  cell chemotaxis  cell chemotaxis  positive regulation of natural killer cell chemotaxis  
Pathways : KEGGCytokine-cytokine receptor interaction    Chemokine signaling pathway   
NDEx Network
Atlas of Cancer Signalling NetworkCXCL14
Wikipedia pathwaysCXCL14
Orthology - Evolution
OrthoDB9547
GeneTree (enSembl)ENSG00000145824
Phylogenetic Trees/Animal Genes : TreeFamCXCL14
Homologs : HomoloGeneCXCL14
Homology/Alignments : Family Browser (UCSC)CXCL14
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCXCL14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXCL14
dbVarCXCL14
ClinVarCXCL14
1000_GenomesCXCL14 
Exome Variant ServerCXCL14
ExAC (Exome Aggregation Consortium)CXCL14 (select the gene name)
Genetic variants : HAPMAP9547
Genomic Variants (DGV)CXCL14 [DGVbeta]
Mutations
ICGC Data PortalCXCL14 
TCGA Data PortalCXCL14 
Broad Tumor PortalCXCL14
OASIS PortalCXCL14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXCL14 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXCL14
DgiDB (Drug Gene Interaction Database)CXCL14
DoCM (Curated mutations)CXCL14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXCL14 (select a term)
intoGenCXCL14
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)5:134906371-134914969  ENSG00000145824
CONAN: Copy Number AnalysisCXCL14 
Mutations and Diseases : HGMDCXCL14
OMIM604186   
MedgenCXCL14
Genetic Testing Registry CXCL14
NextProtO95715 [Medical]
TSGene9547
GENETestsCXCL14
Huge Navigator CXCL14 [HugePedia]
snp3D : Map Gene to Disease9547
BioCentury BCIQCXCL14
ClinGenCXCL14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9547
Chemical/Pharm GKB GenePA35571
Clinical trialCXCL14
Miscellaneous
canSAR (ICR)CXCL14 (select the gene name)
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXCL14
EVEXCXCL14
GoPubMedCXCL14
iHOPCXCL14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat May 28 10:59:29 CEST 2016

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