Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CXorf40A (chromosome X open reading frame 40A)

Identity

Alias_namesCXorf40
chromosome X open reading frame 40
Alias_symbol (synonym)EOLA1
Other alias
HGNC (Hugo) CXorf40A
LocusID (NCBI) 91966
Atlas_Id 56203
Location Xq28  [Link to chromosome band Xq28]
Location_base_pair Starts at 149540974 and ends at 149548331 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CXorf40A   28089
Cards
Entrez_Gene (NCBI)CXorf40A  91966  chromosome X open reading frame 40A
AliasesCXorf40; EOLA1
GeneCards (Weizmann)CXorf40A
Ensembl hg19 (Hinxton)ENSG00000197620 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197620 [Gene_View]  ENSG00000197620 [Sequence]  chrX:149540974-149548331 [Contig_View]  CXorf40A [Vega]
ICGC DataPortalENSG00000197620
TCGA cBioPortalCXorf40A
AceView (NCBI)CXorf40A
Genatlas (Paris)CXorf40A
WikiGenes91966
SOURCE (Princeton)CXorf40A
Genetics Home Reference (NIH)CXorf40A
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf40A  -     chrX:149540974-149548331 +  Xq28   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf40A  -     Xq28   [Description]    (hg19-Feb_2009)
GoldenPathCXorf40A - Xq28 [CytoView hg19]  CXorf40A - Xq28 [CytoView hg38]
ImmunoBaseENSG00000197620
Mapping of homologs : NCBICXorf40A [Mapview hg19]  CXorf40A [Mapview hg38]
OMIM300954   
Gene and transcription
Genbank (Entrez)AI088770 AK055235 AK131373 AK291899 AK294153
RefSeq transcript (Entrez)NM_001171907 NM_001171908 NM_001171909 NM_001324274 NM_001324275 NM_001324276 NM_001324277 NM_001324278 NM_001324279 NM_001324280 NM_178124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf40A
Cluster EST : UnigeneHs.719441 [ NCBI ]
CGAP (NCI)Hs.719441
Alternative Splicing GalleryENSG00000197620
Gene ExpressionCXorf40A [ NCBI-GEO ]   CXorf40A [ EBI - ARRAY_EXPRESS ]   CXorf40A [ SEEK ]   CXorf40A [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf40A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91966
GTEX Portal (Tissue expression)CXorf40A
Human Protein AtlasENSG00000197620-CXorf40A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TE69   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TE69  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TE69
Splice isoforms : SwissVarQ8TE69
PhosPhoSitePlusQ8TE69
Domains : Interpro (EBI)ASCH_domain    CXorf40    PUA-like_sf   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ASCH (SM01022)  
Conserved Domain (NCBI)CXorf40A
DMDM Disease mutations91966
Blocks (Seattle)CXorf40A
SuperfamilyQ8TE69
Human Protein Atlas [tissue]ENSG00000197620-CXorf40A [tissue]
Peptide AtlasQ8TE69
HPRD06625
IPIIPI00291543   IPI00964516   IPI00966278   IPI00968249   
Protein Interaction databases
DIP (DOE-UCLA)Q8TE69
IntAct (EBI)Q8TE69
FunCoupENSG00000197620
BioGRIDCXorf40A
STRING (EMBL)CXorf40A
ZODIACCXorf40A
Ontologies - Pathways
QuickGOQ8TE69
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkCXorf40A
Atlas of Cancer Signalling NetworkCXorf40A
Wikipedia pathwaysCXorf40A
Orthology - Evolution
OrthoDB91966
GeneTree (enSembl)ENSG00000197620
Phylogenetic Trees/Animal Genes : TreeFamCXorf40A
HOGENOMQ8TE69
Homologs : HomoloGeneCXorf40A
Homology/Alignments : Family Browser (UCSC)CXorf40A
Gene fusions - Rearrangements
Fusion : QuiverCXorf40A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf40A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf40A
dbVarCXorf40A
ClinVarCXorf40A
1000_GenomesCXorf40A 
Exome Variant ServerCXorf40A
ExAC (Exome Aggregation Consortium)ENSG00000197620
GNOMAD BrowserENSG00000197620
Varsome BrowserCXorf40A
Genetic variants : HAPMAP91966
Genomic Variants (DGV)CXorf40A [DGVbeta]
DECIPHERCXorf40A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf40A 
Mutations
ICGC Data PortalCXorf40A 
TCGA Data PortalCXorf40A 
Broad Tumor PortalCXorf40A
OASIS PortalCXorf40A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf40A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCXorf40A
Mutations and Diseases : HGMDCXorf40A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CXorf40A
DgiDB (Drug Gene Interaction Database)CXorf40A
DoCM (Curated mutations)CXorf40A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf40A (select a term)
intoGenCXorf40A
Cancer3DCXorf40A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300954   
Orphanet
DisGeNETCXorf40A
MedgenCXorf40A
Genetic Testing Registry CXorf40A
NextProtQ8TE69 [Medical]
TSGene91966
GENETestsCXorf40A
Target ValidationCXorf40A
Huge Navigator CXorf40A [HugePedia]
snp3D : Map Gene to Disease91966
BioCentury BCIQCXorf40A
ClinGenCXorf40A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91966
Chemical/Pharm GKB GenePA134915038
Clinical trialCXorf40A
Miscellaneous
canSAR (ICR)CXorf40A (select the gene name)
DataMed IndexCXorf40A
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf40A
EVEXCXorf40A
GoPubMedCXorf40A
iHOPCXorf40A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 17:39:24 CET 2019
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