Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CXorf51B (chromosome X open reading frame 51B)

Identity

Other aliasCXorf51A
HGNC (Hugo) CXorf51B
LocusID (NCBI) 100133053
Atlas_Id 62225
Location Xq27.3  [Link to chromosome band Xq27]
Location_base_pair Starts at 146809784 and ends at 146810411 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CXorf51B   42787
Cards
Entrez_Gene (NCBI)CXorf51B  100133053  chromosome X open reading frame 51B
AliasesCXorf51A
GeneCards (Weizmann)CXorf51B
Ensembl hg19 (Hinxton)ENSG00000235699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235699 [Gene_View]  ENSG00000235699 [Sequence]  chrX:146809784-146810411 [Contig_View]  CXorf51B [Vega]
ICGC DataPortalENSG00000235699
TCGA cBioPortalCXorf51B
AceView (NCBI)CXorf51B
Genatlas (Paris)CXorf51B
WikiGenes100133053
SOURCE (Princeton)CXorf51B
Genetics Home Reference (NIH)CXorf51B
Genomic and cartography
GoldenPath hg38 (UCSC)CXorf51B  -     chrX:146809784-146810411 +  Xq27.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CXorf51B  -     Xq27.3   [Description]    (hg19-Feb_2009)
GoldenPathCXorf51B - Xq27.3 [CytoView hg19]  CXorf51B - Xq27.3 [CytoView hg38]
ImmunoBaseENSG00000235699
Mapping of homologs : NCBICXorf51B [Mapview hg19]  CXorf51B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001244892
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CXorf51B
Alternative Splicing GalleryENSG00000235699
Gene ExpressionCXorf51B [ NCBI-GEO ]   CXorf51B [ EBI - ARRAY_EXPRESS ]   CXorf51B [ SEEK ]   CXorf51B [ MEM ]
Gene Expression Viewer (FireBrowse)CXorf51B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100133053
GTEX Portal (Tissue expression)CXorf51B
Human Protein AtlasENSG00000235699-CXorf51B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DPH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DPH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DPH9
Splice isoforms : SwissVarP0DPH9
PhosPhoSitePlusP0DPH9
Domains : Interpro (EBI)Spermatid_TP   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)CXorf51B
DMDM Disease mutations100133053
Blocks (Seattle)CXorf51B
SuperfamilyP0DPH9
Human Protein Atlas [tissue]ENSG00000235699-CXorf51B [tissue]
Peptide AtlasP0DPH9
Protein Interaction databases
DIP (DOE-UCLA)P0DPH9
IntAct (EBI)P0DPH9
FunCoupENSG00000235699
BioGRIDCXorf51B
STRING (EMBL)CXorf51B
ZODIACCXorf51B
Ontologies - Pathways
QuickGOP0DPH9
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkCXorf51B
Atlas of Cancer Signalling NetworkCXorf51B
Wikipedia pathwaysCXorf51B
Orthology - Evolution
OrthoDB100133053
GeneTree (enSembl)ENSG00000235699
Phylogenetic Trees/Animal Genes : TreeFamCXorf51B
HOGENOMP0DPH9
Homologs : HomoloGeneCXorf51B
Homology/Alignments : Family Browser (UCSC)CXorf51B
Gene fusions - Rearrangements
Fusion : QuiverCXorf51B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCXorf51B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CXorf51B
dbVarCXorf51B
ClinVarCXorf51B
1000_GenomesCXorf51B 
Exome Variant ServerCXorf51B
ExAC (Exome Aggregation Consortium)ENSG00000235699
GNOMAD BrowserENSG00000235699
Varsome BrowserCXorf51B
Genetic variants : HAPMAP100133053
Genomic Variants (DGV)CXorf51B [DGVbeta]
DECIPHERCXorf51B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCXorf51B 
Mutations
ICGC Data PortalCXorf51B 
TCGA Data PortalCXorf51B 
Broad Tumor PortalCXorf51B
OASIS PortalCXorf51B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCXorf51B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DCXorf51B
Mutations and Diseases : HGMDCXorf51B
BioMutasearch CXorf51B
DgiDB (Drug Gene Interaction Database)CXorf51B
DoCM (Curated mutations)CXorf51B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CXorf51B (select a term)
intoGenCXorf51B
Cancer3DCXorf51B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETCXorf51B
MedgenCXorf51B
Genetic Testing Registry CXorf51B
NextProtP0DPH9 [Medical]
TSGene100133053
GENETestsCXorf51B
Target ValidationCXorf51B
Huge Navigator CXorf51B [HugePedia]
snp3D : Map Gene to Disease100133053
BioCentury BCIQCXorf51B
ClinGenCXorf51B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100133053
Clinical trialCXorf51B
Miscellaneous
canSAR (ICR)CXorf51B (select the gene name)
HarmonizomeCXorf51B
DataMed IndexCXorf51B
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineCXorf51B
EVEXCXorf51B
GoPubMedCXorf51B
iHOPCXorf51B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sun May 10 11:28:57 CEST 2020

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