Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYB561 (cytochrome b561)

Identity

Other namesCYB561A1
FRRS2
HGNC (Hugo) CYB561
LocusID (NCBI) 1534
Location 17q23.3
Location_base_pair Starts at 61509665 and ends at 61523545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYB561   2571
Cards
Entrez_Gene (NCBI)CYB561  1534  cytochrome b561
GeneCards (Weizmann)CYB561
Ensembl (Hinxton)ENSG00000008283 [Gene_View]  chr17:61509665-61523545 [Contig_View]  CYB561 [Vega]
ICGC DataPortalENSG00000008283
cBioPortalCYB561
AceView (NCBI)CYB561
Genatlas (Paris)CYB561
WikiGenes1534
SOURCE (Princeton)NM_001017916 NM_001017917 NM_001017918 NM_001915
Genomic and cartography
GoldenPath (UCSC)CYB561  -  17q23.3   chr17:61509665-61523545 -  17q23.3   [Description]    (hg19-Feb_2009)
EnsemblCYB561 - 17q23.3 [CytoView]
Mapping of homologs : NCBICYB561 [Mapview]
OMIM600019   
Gene and transcription
Genbank (Entrez)AK095244 AK294403 AK294630 AK301541 AK303177
RefSeq transcript (Entrez)NM_001017916 NM_001017917 NM_001017918 NM_001915
RefSeq genomic (Entrez)AC_000149 NC_000017 NC_018928 NT_010783 NW_001838450 NW_004929407
Consensus coding sequences : CCDS (NCBI)CYB561
Cluster EST : UnigeneHs.355264 [ NCBI ]
CGAP (NCI)Hs.355264
Alternative Splicing : Fast-db (Paris)GSHG0013640
Alternative Splicing GalleryENSG00000008283
Gene ExpressionCYB561 [ NCBI-GEO ]     CYB561 [ SEEK ]   CYB561 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49447 (Uniprot)
NextProtP49447  [Medical]
With graphics : InterProP49447
Splice isoforms : SwissVarP49447 (Swissvar)
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM [organisation]   Cyt_b561_euk [organisation]  
Related proteins : CluSTrP49447
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
DMDM Disease mutations1534
Blocks (Seattle)P49447
Human Protein AtlasENSG00000008283 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP49447
HPRD02485
IPIIPI00027144   IPI00903091   IPI01010241   IPI00794485   
Protein Interaction databases
DIP (DOE-UCLA)P49447
IntAct (EBI)P49447
FunCoupENSG00000008283
BioGRIDCYB561
InParanoidP49447
Interologous Interaction database P49447
IntegromeDBCYB561
STRING (EMBL)CYB561
Ontologies - Pathways
Ontology : AmiGOferric-chelate reductase activity  integral to membrane  transmembrane electron transfer carrier  electron transport chain  metal ion binding  
Ontology : EGO-EBIferric-chelate reductase activity  integral to membrane  transmembrane electron transfer carrier  electron transport chain  metal ion binding  
Protein Interaction DatabaseCYB561
Wikipedia pathwaysCYB561
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)CYB561
snp3D : Map Gene to Disease1534
SNP (GeneSNP Utah)CYB561
SNP : HGBaseCYB561
Genetic variants : HAPMAPCYB561
Exome VariantCYB561
1000_GenomesCYB561 
ICGC programENSG00000008283 
Somatic Mutations in Cancer : COSMICCYB561 
CONAN: Copy Number AnalysisCYB561 
Mutations and Diseases : HGMDCYB561
Genomic VariantsCYB561  CYB561 [DGVbeta]
dbVarCYB561
ClinVarCYB561
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600019   
MedgenCYB561
GENETestsCYB561
Disease Genetic AssociationCYB561
Huge Navigator CYB561 [HugePedia]  CYB561 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneCYB561
Homology/Alignments : Family Browser (UCSC)CYB561
Phylogenetic Trees/Animal Genes : TreeFamCYB561
Chemical/Protein Interactions : CTD1534
Chemical/Pharm GKB GenePA27069
Clinical trialCYB561
Cancer Resource (Charite)ENSG00000008283
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineCYB561
iHOPCYB561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:52:03 CEST 2014

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