Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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CYB561 (cytochrome b561)

Identity

Other namesCYB561A1
FRRS2
HGNC (Hugo) CYB561
LocusID (NCBI) 1534
Location 17q23.3
Location_base_pair Starts at 61509665 and ends at 61523545 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CYB561   2571
Cards
Entrez_Gene (NCBI)CYB561  1534  cytochrome b561
GeneCards (Weizmann)CYB561
Ensembl hg19 (Hinxton)ENSG00000008283 [Gene_View]  chr17:61509665-61523545 [Contig_View]  CYB561 [Vega]
Ensembl hg38 (Hinxton)ENSG00000008283 [Gene_View]  chr17:61509665-61523545 [Contig_View]  CYB561 [Vega]
ICGC DataPortalENSG00000008283
cBioPortalCYB561
AceView (NCBI)CYB561
Genatlas (Paris)CYB561
WikiGenes1534
SOURCE (Princeton)CYB561
Genomic and cartography
GoldenPath hg19 (UCSC)CYB561  -     chr17:61509665-61523545 -  17q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYB561  -     17q23.3   [Description]    (hg38-Dec_2013)
EnsemblCYB561 - 17q23.3 [CytoView hg19]  CYB561 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBICYB561 [Mapview hg19]  CYB561 [Mapview hg38]
OMIM600019   
Gene and transcription
Genbank (Entrez)AK095244 AK294403 AK294630 AK301541 AK303177
RefSeq transcript (Entrez)NM_001017916 NM_001017917 NM_001017918 NM_001915
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)CYB561
Cluster EST : UnigeneHs.355264 [ NCBI ]
CGAP (NCI)Hs.355264
Alternative Splicing : Fast-db (Paris)GSHG0013640
Alternative Splicing GalleryENSG00000008283
Gene ExpressionCYB561 [ NCBI-GEO ]     CYB561 [ SEEK ]   CYB561 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49447 (Uniprot)
NextProtP49447  [Medical]
With graphics : InterProP49447
Splice isoforms : SwissVarP49447 (Swissvar)
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM    Cyt_b561_euk    Cytochrome_b561   
Related proteins : CluSTrP49447
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
DMDM Disease mutations1534
Blocks (Seattle)P49447
Human Protein AtlasENSG00000008283
Peptide AtlasP49447
HPRD02485
IPIIPI00027144   IPI00903091   IPI01010241   IPI00794485   
Protein Interaction databases
DIP (DOE-UCLA)P49447
IntAct (EBI)P49447
FunCoupENSG00000008283
BioGRIDCYB561
IntegromeDBCYB561
STRING (EMBL)CYB561
Ontologies - Pathways
QuickGOP49447
Ontology : AmiGOferric-chelate reductase activity  protein binding  integral component of membrane  transmembrane electron transfer carrier  electron transport chain  metal ion binding  transmembrane transport  transmembrane transport  
Ontology : EGO-EBIferric-chelate reductase activity  protein binding  integral component of membrane  transmembrane electron transfer carrier  electron transport chain  metal ion binding  transmembrane transport  transmembrane transport  
Protein Interaction DatabaseCYB561
DoCM (Curated mutations)CYB561
Wikipedia pathwaysCYB561
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerCYB561 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYB561
dbVarCYB561
ClinVarCYB561
1000_GenomesCYB561 
Exome Variant ServerCYB561
SNP (GeneSNP Utah)CYB561
SNP : HGBaseCYB561
Genetic variants : HAPMAPCYB561
Genomic Variants (DGV)CYB561 [DGVbeta]
Mutations
ICGC Data PortalENSG00000008283 
Somatic Mutations in Cancer : COSMICCYB561 
CONAN: Copy Number AnalysisCYB561 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:61509665-61523545
Mutations and Diseases : HGMDCYB561
OMIM600019   
MedgenCYB561
NextProtP49447 [Medical]
GENETestsCYB561
Disease Genetic AssociationCYB561
Huge Navigator CYB561 [HugePedia]  CYB561 [HugeCancerGEM]
snp3D : Map Gene to Disease1534
DGIdb (Drug Gene Interaction db)CYB561
General knowledge
Homologs : HomoloGeneCYB561
Homology/Alignments : Family Browser (UCSC)CYB561
Phylogenetic Trees/Animal Genes : TreeFamCYB561
Chemical/Protein Interactions : CTD1534
Chemical/Pharm GKB GenePA27069
Clinical trialCYB561
Cancer Resource (Charite)ENSG00000008283
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
CoreMineCYB561
GoPubMedCYB561
iHOPCYB561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:09:19 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.