Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYB561 (cytochrome b561)

Identity

Other namesCYB561A1
FRRS2
HGNC (Hugo) CYB561
LocusID (NCBI) 1534
Atlas_Id 40228
Location 17q23.3  [Link to chromosome band 17q23]
Location_base_pair Starts at 61509665 and ends at 61523545 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CYB561 (17q23.3) / GNA13 (17q24.1)CYB561 (17q23.3) / HK1 (10q22.1)CYB561 (17q23.3) / HTT (4p16.3)
CYB561 (17q23.3) / PSPH (7p11.2)CYB561 (17q23.3) / SQSTM1 (5q35.3)CYB561 (17q23.3) / USP32 (17q23.1)
CYB561 (17q23.3) / XBP1 (22q12.1)LTBP2 (14q24.3) / CYB561 (17q23.3)YWHAG (7q11.23) / CYB561 (17q23.3)
CYB561 17q23.3 / GNA13 17q24.1CYB561 17q23.3 / SQSTM1 5q35.3CYB561 17q23.3 / USP32 17q23.1
CYB561 17q23.3 / XBP1 22q12.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)CYB561   2571
Cards
Entrez_Gene (NCBI)CYB561  1534  cytochrome b561
AliasesCYB561A1; FRRS2
GeneCards (Weizmann)CYB561
Ensembl hg19 (Hinxton)ENSG00000008283 [Gene_View]  chr17:61509665-61523545 [Contig_View]  CYB561 [Vega]
Ensembl hg38 (Hinxton)ENSG00000008283 [Gene_View]  chr17:61509665-61523545 [Contig_View]  CYB561 [Vega]
ICGC DataPortalENSG00000008283
TCGA cBioPortalCYB561
AceView (NCBI)CYB561
Genatlas (Paris)CYB561
WikiGenes1534
SOURCE (Princeton)CYB561
Genomic and cartography
GoldenPath hg19 (UCSC)CYB561  -     chr17:61509665-61523545 -  17q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)CYB561  -     17q23.3   [Description]    (hg38-Dec_2013)
EnsemblCYB561 - 17q23.3 [CytoView hg19]  CYB561 - 17q23.3 [CytoView hg38]
Mapping of homologs : NCBICYB561 [Mapview hg19]  CYB561 [Mapview hg38]
OMIM600019   
Gene and transcription
Genbank (Entrez)AK026598 AK095244 AK294403 AK294630 AK301541
RefSeq transcript (Entrez)NM_001017916 NM_001017917 NM_001017918 NM_001915
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)CYB561
Cluster EST : UnigeneHs.355264 [ NCBI ]
CGAP (NCI)Hs.355264
Alternative Splicing GalleryENSG00000008283
Gene ExpressionCYB561 [ NCBI-GEO ]   CYB561 [ EBI - ARRAY_EXPRESS ]   CYB561 [ SEEK ]   CYB561 [ MEM ]
Gene Expression Viewer (FireBrowse)CYB561 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)1534
GTEX Portal (Tissue expression)CYB561
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49447 (Uniprot)
NextProtP49447  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49447
Splice isoforms : SwissVarP49447 (Swissvar)
PhosPhoSitePlusP49447
Domaine pattern : Prosite (Expaxy)CYTOCHROME_B561 (PS50939)   
Domains : Interpro (EBI)Cyt_b561/ferric_Rdtase_TM    Cyt_b561_dom    Cytochrome_b561   
Domain families : Pfam (Sanger)Cytochrom_B561 (PF03188)   
Domain families : Pfam (NCBI)pfam03188   
Domain families : Smart (EMBL)B561 (SM00665)  
DMDM Disease mutations1534
Blocks (Seattle)CYB561
SuperfamilyP49447
Human Protein AtlasENSG00000008283
Peptide AtlasP49447
HPRD02485
IPIIPI00027144   IPI00903091   IPI01010241   IPI00794485   
Protein Interaction databases
DIP (DOE-UCLA)P49447
IntAct (EBI)P49447
FunCoupENSG00000008283
BioGRIDCYB561
STRING (EMBL)CYB561
ZODIACCYB561
Ontologies - Pathways
QuickGOP49447
Ontology : AmiGOferric-chelate reductase activity  protein binding  integral component of membrane  oxidoreductase activity  transmembrane electron transfer carrier  electron transport chain  metal ion binding  transmembrane transport  transmembrane transport  oxidation-reduction process  
Ontology : EGO-EBIferric-chelate reductase activity  protein binding  integral component of membrane  oxidoreductase activity  transmembrane electron transfer carrier  electron transport chain  metal ion binding  transmembrane transport  transmembrane transport  oxidation-reduction process  
NDEx NetworkCYB561
Atlas of Cancer Signalling NetworkCYB561
Wikipedia pathwaysCYB561
Orthology - Evolution
OrthoDB1534
GeneTree (enSembl)ENSG00000008283
Phylogenetic Trees/Animal Genes : TreeFamCYB561
Homologs : HomoloGeneCYB561
Homology/Alignments : Family Browser (UCSC)CYB561
Gene fusions - Rearrangements
Fusion: TCGACYB561 17q23.3 GNA13 17q24.1 BRCA
Fusion: TCGACYB561 17q23.3 SQSTM1 5q35.3 PRAD
Fusion: TCGACYB561 17q23.3 USP32 17q23.1 BRCA
Fusion: TCGACYB561 17q23.3 XBP1 22q12.1 PRAD
Polymorphisms : SNP, variants
NCBI Variation ViewerCYB561 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYB561
dbVarCYB561
ClinVarCYB561
1000_GenomesCYB561 
Exome Variant ServerCYB561
ExAC (Exome Aggregation Consortium)CYB561 (select the gene name)
Genetic variants : HAPMAP1534
Genomic Variants (DGV)CYB561 [DGVbeta]
Mutations
ICGC Data PortalCYB561 
TCGA Data PortalCYB561 
Broad Tumor PortalCYB561
OASIS PortalCYB561 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICCYB561 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch CYB561
DgiDB (Drug Gene Interaction Database)CYB561
DoCM (Curated mutations)CYB561 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYB561 (select a term)
intoGenCYB561
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)17:61509665-61523545  ENSG00000008283
CONAN: Copy Number AnalysisCYB561 
Mutations and Diseases : HGMDCYB561
OMIM600019   
MedgenCYB561
Genetic Testing Registry CYB561
NextProtP49447 [Medical]
TSGene1534
GENETestsCYB561
Huge Navigator CYB561 [HugePedia]
snp3D : Map Gene to Disease1534
BioCentury BCIQCYB561
ClinGenCYB561
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD1534
Chemical/Pharm GKB GenePA27069
Clinical trialCYB561
Miscellaneous
canSAR (ICR)CYB561 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYB561
EVEXCYB561
GoPubMedCYB561
iHOPCYB561
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:44:54 CEST 2016

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