Atlas of Genetics and Cytogenetics in Oncology and Haematology


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CYBC1 (cytochrome b-245 chaperone 1)

Identity

Other aliasC17orf62
Eros
HGNC (Hugo) CYBC1
LocusID (NCBI) 79415
Atlas_Id 80495
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 82442586 and ends at 82450831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)CYBC1   28672
Cards
Entrez_Gene (NCBI)CYBC1  79415  cytochrome b-245 chaperone 1
AliasesC17orf62; Eros
GeneCards (Weizmann)CYBC1
Ensembl hg19 (Hinxton)ENSG00000178927 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178927 [Gene_View]  ENSG00000178927 [Sequence]  chr17:82442586-82450831 [Contig_View]  CYBC1 [Vega]
ICGC DataPortalENSG00000178927
TCGA cBioPortalCYBC1
AceView (NCBI)CYBC1
Genatlas (Paris)CYBC1
WikiGenes79415
SOURCE (Princeton)CYBC1
Genetics Home Reference (NIH)CYBC1
Genomic and cartography
GoldenPath hg38 (UCSC)CYBC1  -     chr17:82442586-82450831 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)CYBC1  -     17q25.3   [Description]    (hg19-Feb_2009)
GoldenPathCYBC1 - 17q25.3 [CytoView hg19]  CYBC1 - 17q25.3 [CytoView hg38]
ImmunoBaseENSG00000178927
Mapping of homologs : NCBICYBC1 [Mapview hg19]  CYBC1 [Mapview hg38]
OMIM618334   
Gene and transcription
Genbank (Entrez)AF269290 AK027743 AK054876 AK056342 AK074950
RefSeq transcript (Entrez)NM_001033046 NM_001100407 NM_001100408 NM_001193653 NM_001193654 NM_001193655 NM_001193657
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)CYBC1
Cluster EST : UnigeneHs.163113 [ NCBI ]
CGAP (NCI)Hs.163113
Alternative Splicing GalleryENSG00000178927
Gene ExpressionCYBC1 [ NCBI-GEO ]   CYBC1 [ EBI - ARRAY_EXPRESS ]   CYBC1 [ SEEK ]   CYBC1 [ MEM ]
Gene Expression Viewer (FireBrowse)CYBC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79415
GTEX Portal (Tissue expression)CYBC1
Human Protein AtlasENSG00000178927-CYBC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQA9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQA9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQA9
Splice isoforms : SwissVarQ9BQA9
PhosPhoSitePlusQ9BQA9
Domains : Interpro (EBI)DUF4564   
Domain families : Pfam (Sanger)DUF4564 (PF15169)   
Domain families : Pfam (NCBI)pfam15169   
Conserved Domain (NCBI)CYBC1
DMDM Disease mutations79415
Blocks (Seattle)CYBC1
SuperfamilyQ9BQA9
Human Protein Atlas [tissue]ENSG00000178927-CYBC1 [tissue]
Peptide AtlasQ9BQA9
IPIIPI00001578   IPI00412066   IPI01014178   IPI00983175   IPI00382518   IPI00795592   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQA9
IntAct (EBI)Q9BQA9
FunCoupENSG00000178927
BioGRIDCYBC1
STRING (EMBL)CYBC1
ZODIACCYBC1
Ontologies - Pathways
QuickGOQ9BQA9
Ontology : AmiGOprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  innate immune response  respiratory burst after phagocytosis  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  innate immune response  respiratory burst after phagocytosis  
NDEx NetworkCYBC1
Atlas of Cancer Signalling NetworkCYBC1
Wikipedia pathwaysCYBC1
Orthology - Evolution
OrthoDB79415
GeneTree (enSembl)ENSG00000178927
Phylogenetic Trees/Animal Genes : TreeFamCYBC1
HOGENOMQ9BQA9
Homologs : HomoloGeneCYBC1
Homology/Alignments : Family Browser (UCSC)CYBC1
Gene fusions - Rearrangements
Fusion : QuiverCYBC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerCYBC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)CYBC1
dbVarCYBC1
ClinVarCYBC1
1000_GenomesCYBC1 
Exome Variant ServerCYBC1
ExAC (Exome Aggregation Consortium)ENSG00000178927
GNOMAD BrowserENSG00000178927
Varsome BrowserCYBC1
Genetic variants : HAPMAP79415
Genomic Variants (DGV)CYBC1 [DGVbeta]
DECIPHERCYBC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisCYBC1 
Mutations
ICGC Data PortalCYBC1 
TCGA Data PortalCYBC1 
Broad Tumor PortalCYBC1
OASIS PortalCYBC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDCYBC1
BioMutasearch CYBC1
DgiDB (Drug Gene Interaction Database)CYBC1
DoCM (Curated mutations)CYBC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)CYBC1 (select a term)
intoGenCYBC1
Cancer3DCYBC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM618334   
Orphanet
DisGeNETCYBC1
MedgenCYBC1
Genetic Testing Registry CYBC1
NextProtQ9BQA9 [Medical]
TSGene79415
GENETestsCYBC1
Target ValidationCYBC1
Huge Navigator CYBC1 [HugePedia]
snp3D : Map Gene to Disease79415
BioCentury BCIQCYBC1
ClinGenCYBC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79415
Chemical/Pharm GKB GenePA142672245
Clinical trialCYBC1
Miscellaneous
canSAR (ICR)CYBC1 (select the gene name)
DataMed IndexCYBC1
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineCYBC1
EVEXCYBC1
GoPubMedCYBC1
iHOPCYBC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:25:03 CEST 2019

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